Submitted SNP(ss) Details: ss880

Submitted SNP(ss) Details: ss880

Submitter
Handle	WIAF
Submitter SNP ID	WIAF-1116
RefSNP(rs#)	rs858
Submitted Batch ID	ABI.cDNA
Submitted Date	Jan 23, 1999
Publication Cited	9582121
First entry to dbSNP	Jan 23 1999 12:00:00:000AM

Resource Links
STS Accession	G05698
GenBank Accession	Z38539
Submitted STS ID	G05698
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	HSC0FB012,HSC0FB012
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	cDNA
Method	ABI
Ascertainment Samplesize	6
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable
PCR Confirmed	Y
In Expressed Sequence	Y

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
CONFIRMED by second method

Fasta sequence (Legend)

 CACATTTTGA ATGCAACTGA GAAANTGGTT TTNTAGGCCT ACCTTTTATT TAAGAGTACA
 TCTGGCTCCA ATGTTACCCC AAACATGCAA AACATAAGGC AACAATTCTG ATCATTTTAT
 AGGNTCCCAA GCCCATTAGC AATATCTTA
 R
 TCAAATTTTA AAAAGAGAAC AGGAAATAAG GAAGGCCTAA CAGAGGAGTT AAATAATTGT
 GCAAAACTTA TCAGTTCTTC

Submitted Frequency for ss880

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
CEPH - MULTI-NATIONAL	184	G=0.95999998	A=0.04000000	0.077 +/-0.038			1_2004	SEQUENOM

dbSNP summary of Genotypes for ss880

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	120	120	G=0.95833331	A=0.04166667	G/G=0.91666669 A/G=0.08333334	Pr(chiSq=0.009,df=1) =1.000	Genotype Freq.
HapMap-HCB - EAST ASIA	90	90	G=0.98888886	A=0.01111111	G/G=0.97777778 A/G=0.02222222	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HapMap-YRI	120	120	G=0.99166667	A=0.00833333	G/G=0.98333335 A/G=0.01666667	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	282	282	G=0.99645388	A=0.00354610	G/G=0.99290782 A/G=0.00709220	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss880

There is no individual genotype data for ss880.

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