NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss8819683           
Submitter
HandleSNP500CANCER
Submitter SNP IDAPOB-05
RefSNP(rs#)rs520354
Submitted Batch ID08272003_update
Submitted DateOct 28, 2003
Publication CitedN.D.
First entry to dbSNPMay 30 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQUENCING
Ascertainment Samplesize204
PopulationP1
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Platform: Sequencing Primer F: CTCCTGTCCTTCTGTCAC, Temp: 50.75, GC Content:55.56, Product Size: 243 Primer R: GAAGCTGGAGCACTCTAA, Temp: 51.27, GC Content:50
Platform: TaqMan Forward primer: CAAAGGCCAGAGGCTTGGA, Amount: 900 nM Reverse primer: CCTTCTGTTCTCTTCTGC, Amount: 900 nM Probe 1: CTTCTGTTCTTTTCTGC, Amount: 200 nM Probe 2: GGATGTAGGGCAGCAAAACCA, Amount: 200 nM Annealing temperature: 60 C

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8819683|allelePos=256|len=538|taxid=9606|alleles='C/T'|mol=Genomic
 GGCTGTTTTT TATACAGACT AGAGATAGGA CCCTGAGCAG GCACGGGAAG GTCTGCCCAG
 GCTTCACGGC CTGGGATCAG TTGAGCCAAG GCTTGAGTCA GGCTCCTCCC TCCCAGCCCA
 GAGCTCTGTC TTTCCTCCTG TCCTTCTGTC ACTGGCACCA AACTGCCTCT AATCTCATCA
 CTTGAGAGTA ATGACTACTC ACCTCTGAGA AGGTTCCRGG GATGGATGTA GGGCAGCAAA
 ACCACCTTCT GTTCT
 Y
 TTCTGCACAA GGACTCCTTG TGCCAGCTCC AAGCCTCTGG CCTTTGAAGR AGTCCCAAGA
 CCTGTGTTCT CCCCCTCTCC CTCATCCCAT GAAGTGGAGT GACTTAGAGT GCTCCAGCTT
 CTTGTCCTTC CACCCCCAGT ACCACCCTGA CCAAACATGG CCCCACTGCC ACCGGCCTGG
 AGCACCCTCT CCTCTCTGTT AACTGGGGCC ATGGAGCACC ATATTACCTG AGCCTGCCTG
 ACCCCTGCAA CATCTTCCCT GATATGAGCC CCAGCCTGTC TC

  Submitted Frequency for ss8819683 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
HISP1
MULTI-NATIONAL
46T=0.60900003
C=0.39100000
0.476 +/-0.044C/T=0.60900003
T/T=0.30399999
C/C=0.08700000
0.60908272003SNP500CANCER
AFR1
MULTI-NATIONAL
48T=0.89600003
C=0.10400000
0.186 +/-0.099T/T=0.79200000
C/T=0.20800000
C/C=0.00000000
0.20808272003SNP500CANCER
P1
MULTI-NATIONAL
204T=0.55400002
C=0.44600001
0.494 +/-0.011C/T=0.42199999
T/T=0.34299999
C/C=0.23500000
0.42208272003SNP500CANCER
PAC1
MULTI-NATIONAL
48C=0.81300002
T=0.18700001
0.304 +/-0.100C/C=0.70800000
C/T=0.20800000
T/T=0.08400000
0.20808272003SNP500CANCER
CAUC1
MULTI-NATIONAL
62T=0.53200001
C=0.46799999
0.498 +/-0.011C/T=0.61299998
T/T=0.22600000
C/C=0.16100000
0.61308272003SNP500CANCER


  dbSNP summary of Genotypes for ss8819683 back to top
No sufficient data to compute Hardy-weinberg probability for ss8819683.


  Submitted individual genotype for ss8819683 back to top
There is no individual genotype data for ss8819683.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement