Submitter | Handle | SNP500CANCER | Submitter SNP ID | APOB-05 | RefSNP(rs#) | rs520354 | Submitted Batch ID | 08272003_update | Submitted Date | Oct 28, 2003 | Publication Cited | N.D. | First entry to dbSNP | May 30 2003 12:00:00:000AM |
| Resource Links | GenBank Accession | NT_005204.11
| Submitted Gene Name | N.D | Submitted Gene ID | N.D. | Submitted SNP Synonyms | N.D | Submitted linkout | APOB-05 |
| Assay | Species | Homo sapiens | Molecular Type | Genomic | Method | SEQUENCING | Ascertainment Samplesize | 204 | Population | P1 |
| Allele | Observed Allele | C/T | Ancestral Allele | N.D. | Allele Origin | N/A | SNP Class | SNV | CpG Code | Unknown |
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Comment | Platform: Sequencing Primer F: CTCCTGTCCTTCTGTCAC, Temp: 50.75, GC Content:55.56, Product Size: 243 Primer R: GAAGCTGGAGCACTCTAA, Temp: 51.27, GC Content:50 Platform: TaqMan Forward primer: CAAAGGCCAGAGGCTTGGA, Amount: 900 nM Reverse primer: CCTTCTGTTCTCTTCTGC, Amount: 900 nM Probe 1: CTTCTGTTCTTTTCTGC, Amount: 200 nM Probe 2: GGATGTAGGGCAGCAAAACCA, Amount: 200 nM Annealing temperature: 60 C
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>gnl|dbSNP|ss8819683|allelePos=256|len=538|taxid=9606|alleles='C/T'|mol=Genomic GGCTGTTTTT TATACAGACT AGAGATAGGA CCCTGAGCAG GCACGGGAAG GTCTGCCCAG
GCTTCACGGC CTGGGATCAG TTGAGCCAAG GCTTGAGTCA GGCTCCTCCC TCCCAGCCCA
GAGCTCTGTC TTTCCTCCTG TCCTTCTGTC ACTGGCACCA AACTGCCTCT AATCTCATCA
CTTGAGAGTA ATGACTACTC ACCTCTGAGA AGGTTCCRGG GATGGATGTA GGGCAGCAAA
ACCACCTTCT GTTCT
Y
TTCTGCACAA GGACTCCTTG TGCCAGCTCC AAGCCTCTGG CCTTTGAAGR AGTCCCAAGA
CCTGTGTTCT CCCCCTCTCC CTCATCCCAT GAAGTGGAGT GACTTAGAGT GCTCCAGCTT
CTTGTCCTTC CACCCCCAGT ACCACCCTGA CCAAACATGG CCCCACTGCC ACCGGCCTGG
AGCACCCTCT CCTCTCTGTT AACTGGGGCC ATGGAGCACC ATATTACCTG AGCCTGCCTG
ACCCCTGCAA CATCTTCCCT GATATGAGCC CCAGCCTGTC TC
No sufficient data to compute Hardy-weinberg probability for ss8819683.
There is no individual genotype data for ss8819683.
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