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Submitted SNP(ss) Details: ss88301789           
Submitter
HandleBCMHGSC_JDW
Submitter SNP IDJWB-0314113
RefSNP(rs#)rs555895
Submitted Batch IDJWB_snps_no_apoe
Submitted DateFeb 26, 2008
Publication Cited[1] The Complete Genome of a Single Individual by Massively Parallel DNA Sequencing
First entry to dbSNPFeb 26 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodJWB_SNP_DISCOVERY
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Ref=T|Alt=G|Chr=chr10|Position=89710887|Strand=+|dbSNP=+|Score=39|Reads=2:2:4

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss88301789|allelePos=251|len=501|taxid=9606|alleles='T/G'|mol=Genomic
 ATGTTTCACT TTTGGGTAAA TACATTCTTC ATACCAGGAC CAGAGGAAAC CTCAGAAAAA
 GTAGAAAATG GAAGTCTATG TGATCAAGAA ATCGATAGCA TTTGCAGTAT AGAGCGTGCA
 GATAATGACA AGGAATATCT AGTACTTACT TTAACAAAAA ATGATCTTGA CAAAGCAAAT
 AAAGACAAAG CCAACCGATA CTTTTCTCCA AATTTTAAGG TCAGTTAAAT TAAACATTTT
 GTGGGGGTTG
 K
 TGACTTGTAT GTATGTGATG TGTGTTTAAT TCTAGGAGTA CAGCTGATGA AGAACTTGCT
 TGACAAGTTT TTAACTTATG TATTATTTCG AAGCAGTGTT TACGTAGCAG TAACATGAAA
 GTTTCTAATA AAATACCCAA TGTACACAGC GTCAAAAAAG CTGCATTTTT CCTTTTCCTA
 ATTCTTCGTT GTTTGCTGAA ATCTGGGGCA AAGGTGCGGG AGGGGGCTAA ATGACTGGGA
 TATGAAGTAG

  Submitted Frequency for ss88301789 back to top
There is no frequency submission for ss88301789.


  dbSNP summary of Genotypes for ss88301789 back to top
No sufficient data to compute Hardy-weinberg probability for ss88301789.


  Submitted individual genotype for ss88301789 back to top
There is no individual genotype data for ss88301789.