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Submitted SNP(ss) Details: ss91003           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0111011
RefSNP(rs#)rs742230
Submitted Batch IDTSC-SANGER-19-25-000905-RESUBMISSION
Submitted DateSep 06, 2000
Publication CitedN.D.
First entry to dbSNPSep 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTSC-SANGER-19-25
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 13
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss91003|allelePos=522|len=805|taxid=9606|alleles='C/T'|mol=Genomic
 CTGGCGCATA TTGAGAGCTG GAAACATGTT AGAGATTTTG TTACTTCAAA TGCCTGGGAC
 TGGAGGAGGA CTTTGAGGTC CCTTTGAGCG GTGACAGCCA CTGATTCTCT GATTACTGTG
 TGGTTTGGGC GGGGGTGGGG GAAACCCAGA AGGTGTGAAC TGCTGAGTGG GAGAGGTGGA
 GGCGGTTGGC AGGGAGGAAG GAGGGTGCCG GGTCCGCTGG CATGCAGACA CACATCTGCA
 GTGCCCATCC TGCTGACTGG GAAATTCCCA CCTGAGAGAA CAGTCAGTGG TTGACAGTGA
 CAATCTGGGC CACTTTAGGA GATGGGACAC TTTGGGAGTT AAGACTGGGG GTTGGGACCC
 AGAACCCTTG CCTGGGTCTC TTGACTTCTG CCAGAACTAA GAAGTCTGAT GGAAACCTCT
 GCTTGTTGCC TCAATTTTTA GTTCTACATT CTGTCTGAAT TCCAGGAAGA TGGCTTTCCA
 TGAAAGACAT GCACCCAGTA ACACCACAGA GCTCTTAACA A
 Y
 AGGGCTGAAG GTGTGAACCA AGAAAAGGAA GGGAGGAAAA CCAGGTCATT GCTGTCTCCT
 GCAGTGATTA GGGCTGAGGT CCCTGCCCTG CCAGACATGA GGAGCCTTTC TTACAATACA
 TATTTTATAT CAAGCCTTAC TATTCTACGT TGAAATGTTA AATAATGAAA CCTACCTATT
 TACATGCAGT TGCAAACTAT GTTATTTCAT AAGCTATGAT GGAGAAAAAA AGGGAAAGTT
 ATTTATAATA AACACTGAGT TTGATATGTA AACGCTTGGG GCC

  Submitted Frequency for ss91003 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
TSC_42_A
- EAST ASIA 		82T=0.54000002
C=0.46000001
0.497 +/-0.012TSC-ORCHID-TSC_42_A-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
TSC_42_C
- NORTH AMERICA 		80T=0.52999997
C=0.47999999
0.489 +/-0TSC-ORCHID-TSC_42_C-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
TSC_42_C
- NORTH AMERICA 		80T=0.52499998
C=0.47499999
0.499 +/-0.008TSC-ORCHID_TSC_42_C_020109TSC-ORCHID


  dbSNP summary of Genotypes for ss91003 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU226226T=0.57964599
C=0.42035398C/T=0.46902654
T/T=0.34513274
C/C=0.18584071
Pr(chiSq=0.159,df=1)
=0.752		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686T=0.53488374
C=0.46511629C/T=0.51162791
T/T=0.27906978
C/C=0.20930232
Pr(chiSq=0.034,df=1)
=1.000		Genotype
Freq.
HapMap-JPT172172T=0.54651165
C=0.45348838C/T=0.55813956
T/T=0.26744187
C/C=0.17441860
Pr(chiSq=1.366,df=1)
=0.251		Genotype
Freq.
HapMap-YRI224280C=0.51339287
T=0.48660713C/T=0.57857144
C/C=0.21428572
T/T=0.20714286
Pr(chiSq=3.555,df=1)
=0.100		Genotype
Freq.
HAPMAP-ASW98106C=0.52040815
T=0.47959185C/T=0.45283020
C/C=0.28301886
T/T=0.26415095
Pr(chiSq=0.526,df=1)
=0.479		Genotype
Freq.
HAPMAP-CHB8282C=0.54878050
T=0.45121950C/T=0.46341464
C/C=0.31707317
T/T=0.21951219
Pr(chiSq=0.169,df=1)
=0.752		Genotype
Freq.
HAPMAP-CHD170170C=0.51176471
T=0.48823529C/T=0.52941179
C/C=0.24705882
T/T=0.22352941
Pr(chiSq=0.300,df=1)
=0.584		Genotype
Freq.
HAPMAP-GIH176176T=0.66477275
C=0.33522728C/T=0.46590909
T/T=0.43181819
C/C=0.10227273
Pr(chiSq=0.181,df=1)
=0.752		Genotype
Freq.
HAPMAP-LWK178178C=0.51685393
T=0.48314607C/T=0.47191012
C/C=0.28089887
T/T=0.24719101
Pr(chiSq=0.270,df=1)
=0.655		Genotype
Freq.
HAPMAP-MEX94148T=0.63829786
C=0.36170211C/T=0.47297296
T/T=0.36486486
C/C=0.16216215
Pr(chiSq=0.905,df=1)
=0.343		Genotype
Freq.
HAPMAP-MKK286286C=0.62587410
T=0.37412587C/T=0.48251748
C/C=0.38461539
T/T=0.13286713
Pr(chiSq=0.132,df=1)
=0.752		Genotype
Freq.
HAPMAP-TSI176176T=0.61363637
C=0.38636363C/T=0.59090906
T/T=0.31818181
C/C=0.09090909
Pr(chiSq=5.334,df=1)
=0.025		Genotype
Freq.

  Submitted individual genotype for ss91003 back to top
There is no individual genotype data for ss91003.

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