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Submitted SNP(ss) Details: ss942           
Submitter
HandleWIAF
Submitter SNP IDWIAF-1300
RefSNP(rs#)rs919
Submitted Batch IDABI.cDNA
Submitted DateJan 23, 1999
Publication Cited9582121
First entry to dbSNPJan 23 1999 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
cDNA
MethodABI
Ascertainment Samplesize6
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
PCR ConfirmedY
In Expressed SequenceY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
CONFIRMED by second method

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss942|allelePos=176|len=308|taxid=9606|alleles='G/T'|mol=cDNA
 GATGGAAAGC CATTTTATTT TTCTCTAAAT TTTAAAATAG AAGACTTTAA TGGAAAACAT
 TTAGTACCAT CATGTCACCC TGAATGCCAG CAATACCTCG ACTTTTACAC ACGCAGGAAG
 CCTAGTAAAA GCCCCGTCAG TAGTACACAT TTCTCTATGG TCCTTCAACA GTTTT
 K
 CATATACAAA ATTTTCTGCT ATTTTGCTTT AGCAAACAGC AATAACTTTT GTGTTTCCTA
 TATGACACCT AATATCCAGT CCTACAGTAA TATAGTTAGA AANATAAAAG GCTTAAAAAT
 TTCATAGTAC GA

  Submitted Frequency for ss942 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184G=0.85000002
T=0.15000001
0.255 +/-0.0521_2004SEQUENOM


  dbSNP summary of Genotypes for ss942 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226G=0.87168139
T=0.12831858G/G=0.74336284
G/T=0.25663716
Pr(chiSq=0.588,df=1)
=0.479
Genotype
Freq.
HAPMAP-ASW98106G=0.92857140
T=0.07142857G/G=0.84905660
G/T=0.13207547
T/T=0.01886792
Pr(chiSq=1.979,df=1)
=0.200
Genotype
Freq.
HAPMAP-CHB8282G=0.98780489
T=0.01219512G/G=0.97560978
G/T=0.02439024
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD170170G=0.99411762
T=0.00588235G/G=0.98823529
G/T=0.01176471
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH176176G=0.96022725
T=0.03977273G/G=0.92045456
G/T=0.07954545
Pr(chiSq=0.012,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180G=0.98333335
T=0.01666667G/G=0.96666664
G/T=0.03333334
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX100154G=0.88999999
T=0.11000000G/G=0.77922076
G/T=0.22077923
Pr(chiSq=0.262,df=1)
=0.655
Genotype
Freq.
HAPMAP-MKK286286G=0.90559441
T=0.09440559G/G=0.82517481
G/T=0.16083916
T/T=0.01398601
Pr(chiSq=0.504,df=1)
=0.479
Genotype
Freq.
HAPMAP-TSI176176G=0.77272725
T=0.22727273G/G=0.60227275
G/T=0.34090909
T/T=0.05681818
Pr(chiSq=0.076,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss942 back to top
There is no individual genotype data for ss942.