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Submitted SNP(ss) Details: ss95215836           
Submitter
HandleEGP_SNPS
Submitter SNP IDPEMT-086919
RefSNP(rs#)rs3816511
Submitted Batch IDPEMT-EGP_ASIAN-032008
Submitted DateMar 21, 2008
Publication CitedN.D.
First entry to dbSNPMar 21 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize44
PopulationEGP_ASIAN-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss95215836|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 CCCTGGCTCC AGCCAGGCCT GACCTGCCTC TGTCCTTTCA GGCACGCCAG CCCCACGGGC
 CTGCTCCTGA CGGTGCTGGT GGCCCTCACC TACATAGTGG CTCTCCTATA CGAAGAGTGA
 GTAGGGGCTG CGGCGGGTGG GGGCGTGGCT GCCCGACTGG CCCTGTCTCT CCCTCTAGAA
 CCTTTCCTTG TGGCCAGGGC AGGCTCAGGA CAGGCTGCCG TCAGCCAGGC CCACTCCAGG
 GCTCCCAGGT CAGAG
 Y
 GGCCATGGTA GCTTACAATG CGGCCTGCAG GACCCAGCAG GCAGCCGGCC CCTCTCCCCT
 CCCCTCTCCC GCCTGCGCTC TGAAGGCTCC AAGTCAGTGT TGCCCCAGTG GCTCTGGGGG
 ATGAAGGGGA TCCCGGTCCC ATCTGGACAC CCTCAAGCTG ATGGACGCAG AGCTCTGGTG
 CGGGCAGTGG GTCACCCCCA GGACCTGCTG ACCGAAGCCT CTCCCCGCTG CCCGGCAGGC
 CCTTCACCGC TGAGA

  Submitted Frequency for ss95215836 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
EGP_YORUB-PANEL24C=0.62500000
T=0.37500000
PEMT-EGP_YORUB-032008EGP_SNPS
EGP_HISP-PANEL40T=0.52499998
C=0.47499999
PEMT-EGP_HISP-032008EGP_SNPS
EGP_ASIAN-PANEL44C=0.77272701
T=0.22727300
PEMT-EGP_ASIAN-032008EGP_SNPS
EGP_AD-PANEL30C=0.76666701
T=0.23333301
PEMT-EGP_AD-032008EGP_SNPS
EGP_CEPH-PANEL44T=0.72727299
C=0.27272701
PEMT-EGP_CEPH-032008EGP_SNPS


  dbSNP summary of Genotypes for ss95215836 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
EGP_YORUB-PANEL2424C=0.62500000
T=0.37500000C/C=0.41666666
C/T=0.41666666
T/T=0.16666667
Pr(chiSq=0.148,df=1)
=0.752
Genotype
Freq.
EGP_HISP-PANEL4040T=0.52499998
C=0.47499999C/T=0.55000001
T/T=0.25000000
C/C=0.20000000
Pr(chiSq=0.211,df=1)
=0.655
Genotype
Freq.
EGP_CEPH-PANEL4444T=0.72727275
C=0.27272728T/T=0.50000000
C/T=0.45454547
C/C=0.04545455
Pr(chiSq=0.468,df=1)
=0.527
Genotype
Freq.
EGP_AD-PANEL3030C=0.76666665
T=0.23333333C/C=0.53333336
C/T=0.46666667
Pr(chiSq=0.573,df=1)
=0.479
Genotype
Freq.
EGP_ASIAN-PANEL4444C=0.77272725
T=0.22727273C/C=0.54545456
C/T=0.45454547
Pr(chiSq=0.767,df=1)
=0.403
Genotype
Freq.

  Submitted individual genotype for ss95215836 back to top
There is no individual genotype data for ss95215836.

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