NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss98259           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0127307
RefSNP(rs#)rs747657
Submitted Batch IDTSC-SANGER-19-25-000905-RESUBMISSION
Submitted DateSep 06, 2000
Publication CitedN.D.
First entry to dbSNPSep 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-25
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 2
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss98259|allelePos=232|len=924|taxid=9606|alleles='C/G'|mol=Genomic
 CTGTTTGACA GCCAGCCACA AGGCAGCCTT CTCAGGACAG CAAGCCCCCG GCTTCTGTGC
 TGTCCAGGGT GCCTCGGGCT GTAGCAACAG CTTTGGAAAC ACTTTACCTT TGACACTGTG
 CTTGCCCTTG GGTAACTTGC TGATATGTGA AGCGTGCTTC AGTTCATACC TATTCAAAAG
 AGGACAGTCT CAGAAGAGGC CTTCACACTG GGCTCTCGAA ACCAACAGTT T
 S
 ATTAGGAGAA TAAGATCAGA TACAGAGATG AGATAAAAGT CCACAAAACC CAGACCATCT
 AAACTGCTCA GGCTCCCTCC TGAGTTTCTG GAACTGTTCC AGAACCTGAA ACTGCAGTTG
 CGGCTGAACA TAGTTTGTGC CCAGCGATCA CTGCTATGGG GCCATTTTCA AGGCAAGGCC
 CTATTTGGAG TGGTGGTCAG CAGCTCTAGG TTTCCGTCCA CATTCCACAG TCCCCAGACC
 CCTGGCCTTT TACATGACCT TGTGCTTTTG GTTACAGTTC ACAGGACTAG GGTCGATGTC
 CAAATCAAGC TGGACTAATC AGATCTTTCT CTATGGAGAA TCTGGAAGTG GAATTAAAAT
 TCCAGTTCCA TTTGGGTTGG TCTAAGAAAA CTGAAACACT GTGAGTGGAG GAGGCGGCCT
 GGGGGATCAT CCTTTGTGCA ACTCAATCTC TCTGCTTTCC CAGTCCATGG AGAGAAAAAC
 TGCCAGCTCT GGAGGCCTGG CTGCGTTCCT GCCCTTGCAT TTCCTGAAAT ATCCCTGTAT
 CTTCCTTTGT TTCCTTAACT TGAATTGGAT TCTGCTACTT ATAAGAAAAG AAATCTTTAT
 TGGGCGGTCC AGGTACTGCA GTGGGGAATT CTACTCTTCC ACCAAGGGAA AGTCTGCCTA
 TAGCCCATTC CAACTGTCCC ATGAATGCCA TC

  Submitted Frequency for ss98259 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
TSC_42_AA
NORTH AMERICA
72C=0.57999998
G=0.41999999
0.487 +/-0.026TSC-ORCHID-TSC_42_AA-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
TSC_42_C
NORTH AMERICA
80C=0.71300000
G=0.28700000
0.409 +/-0.061TSC-ORCHID_TSC_42_C_020109TSC-ORCHID
TSC_42_C
NORTH AMERICA
80C=0.70999998
G=0.28999999
0.412 +/-0.060TSC-ORCHID-TSC_42_C-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL


  dbSNP summary of Genotypes for ss98259 back to top
No sufficient data to compute Hardy-weinberg probability for ss98259.


  Submitted individual genotype for ss98259 back to top
There is no individual genotype data for ss98259.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement