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Submitted SNP(ss) Details: ss9866207           
Submitter
HandleBCM_SSAHASNP
Submitter SNP IDchr1.NT_077960.1_194104
RefSNP(rs#)rs6684820
Submitted Batch IDBaylor-WGS-200306-1
Submitted DateJun 27, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJun 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBAYLOR-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:45822659position:-439quality:25

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss9866207|allelePos=3654|len=6954|taxid=9606|alleles='G/A'|mol=Genomic
 GCGCGGTGTG AAACTGGGAT AAAAACGGGG CTTGGCCGAA GGACTTTTAT CTGTCTTGGT
 CACCCCGGCC AGGCCCCGGA AGCAGCAGCC AGGGATGGTC CTTCCTCACC CACAGGCGTG
 TGTCACTGTG GCTGGGACGG CAGCGCTCAG AGGAGCCTCC AGTTACTTTC CTCACATCTC
 CCAAACTCTC Tcttaattgc gataattcac agaacataaa attcacgatc ttaaagtgtg
 cagttcagtg gcttttagta tttcaaaagt tgtgcaatta tcaccaccaa ttccagaaca
 tttcatcacc tcaaaaaaga aacactacta acgagccatc acagctacat tgccggccat
 tcctggtcac cgctgatgga ccttctctct ctCTCctgtc tcctttctct taccgtggtg
 ttttcagggt tcatccacgt agttcacgta tccttttctt ttcttttttt tttttttgag
 acagagtctc actctgttgc ccaggctgga gtacagtggc acaatctcag ctcactgcaa
 cctccacctc ctgggttcaa gcaattctcc tgcctcagcc tcccaagtag ctgcaactac
 aagtgcccgc caccacgcgc ggctaatttt tgtattttta gtagagatgg ggttttgccg
 tgttggccag gctggtctca aactcctgac ctcaggtgac ccgcccgcct cagcctccca
 aagtgctggg attacaggcg tgagccactg cacccagcca tgtatccctt tcatacaacg
 ttccgtcata tggatggacc atattttGCC ATCAGCTGGT GGACACAGTT TTATTATTGA
 gctgttatga ataatgttgc tataaatatt cacacaaaaa tgtttgtatg aatatatatt
 ttcagtgctc ctgggaaaat acccaggaat ggagtcgtgg gtcacagggt gacacactta
 actttctgag gaaccaggaa tcacttttcc agtttctcca gatctcgcca acacttgtta
 ttttcctttc tttattaaag aatcaccatc tggtcggtgt gcagggatat ctcattgtgg
 gtttgatttc cattttgcta atgacaaata acttcatgtg ttcactggcc agctatgtat
 attctttaga gaaatgtcta ttcaaacgct gtggctgttc tttaccatcc agttgtgaaa
 gttttttttg tttgtttttt gttttttttt ttttgagaca gaggctcgct ctgtcgtcca
 ggctggagtg cagtgatgtg attctcggct cactgcaagc tccgcctccc gggttcacgc
 cattctcctg cctcagcctc ccgagtagct gggactacag gcgcccgcca ccacgcccgg
 ctaattcttt gtatttttag tagagacagg gtttcaccgt gttagccagg atggtctcga
 tctcctgacc tcgtgatctg cccgcctcgg cctcccaaag tgctgggatt ataggtgtga
 gccaccgcgc ccggccaaaa gttctttaca tattctaaac actaggcctt tatcagacat
 atgatttgcc aatatttttc tggaatattg tggctgtctt ttcactttct tgataatgtc
 ctttgaccac aaaagctttt agttttgatg aaatccagtt tatccatttt tttcctttgg
 ttactcatgc ttttagtatc atatctaaaa atccattgtg ccaggtgcgg tgactcacgc
 ctgtaatccc agcactttgg gaggccatgg ttgttagatc acctgaggtc aggagttcaa
 gaccagcctg accaatatgg tgaaacccca tctctactaa aaatatgaaa attagccagg
 cgtggtggtg ggtgcttgta gtcccagcta cttgggaggc tgagaaagaa gaattgcttg
 aacccgggag gtggaggtag ctgtgagcca agatcgtgcc actgcactct agcctgggca
 acagagcaag actccatctc aaaaaacaaa aaaataaaaa tccattgcac tttgggaggc
 tgaggaaggt ggatcacctg aggtcaggag tttgagacca gcctggccaa tgtggagaaa
 ccccatctct actaaaaata caaaaattag ctgggtgtgg tggcgtgcac ctgtagtccc
 agctactcaa gatgctgagg caagcgaatc acttgaaccc gggaggcaga ggttgcagtg
 agtggagatc gcactgctgc actccaacct gggtgatgga gcaagactcc atctcaaaaa
 aaaaaaaaaa ttgccaaatc cagcagagtg aaaattacac ttatgtttct ttctaaaatg
 gtatagtttt agctcttata tttaggtctt ggatccattt tcagttaatt tttgtgtatg
 gtgtgagtta gggatccaac agcattctct tgcatgtggc tatccagtta tcccagcacc
 atttgttgaa gagactattc tttcccccat ggaatggtcc tggcatagta tcaaaaacca
 attgaccaga gctgcaagtg tttatttttg gactctcagt tccattccat tagtgtatat
 gtctgtcttt atgccagtac cacatggttt tgattgctgt agctttgtag taagtcctga
 aattgggata tgtgagtctt tcaatattgt tctttttcaa gattattttg gctattcagg
 ggccccttac aattccacaa ttccatatga attttaagat tggcttttcc atttctgggg
 aaaaagtcca atgaaatttt tttttttttt ttttgagaca gagtctcatt ctgttgccca
 ggctggagtg cagtggggca atctcagctc actgcagcct cgcctcccag gttcaagcga
 ttctcctgcc tcagcctccc tagtagctgg gattacaggc acccaccacc acgctcggct
 aatttttgta tttttagcag agaccaggtt tcactgtgtt ggccaggctg atctcgaact
 cctgacctca ggcgatctgc ccacctcagc atctcaaagt gctgggatta caggtgtgag
 ccaccacacc cagcctcatc gaaattttaa taggcattgc attgaatctg taagtcacgt
 agcagtggca tcttaacaat atttagtctt ccgatccatg aatataggat gtctttccat
 ttttctaggt cttcttccat ttctttcagc aatgttttct agttttcagc atacaagtct
 gtcacctacg gtaaatatta ttctaggtat tttattattt tgacacttgt gaatagaatt
 attttttaaa tttccttttt ggattgtcca ttgctagtgt ataaaaataa aactgatttt
 tgtgtgttga tcttgtatcc ttcaactttc ctgaattcac ttattagctc cgtgtgtgtg
 tgcactcttc aagattttta tataaggatc atgtcatctg gaatagaaac agctttacct
 cttcctttca aatttatatg cattttattt cttttcttac atattgccgg ctacttccag
 aacaatgttg aatagaagta gcaaaagcag tcatccttgt ttgttcctga tctgaggagg
 aaggccgtgg gtttctcata aatgccctcg tcaggttgag gaagttccct tct
 R
 ttcctaattg gttaagtgtt ttttgttaat atcctagaag gatgttgaaa tctgtcaaat
 gctttttctg tctccactga gatgagtgtg tcttatttcc ccttcattct attaatgtgt
 tgtatcgcac tgattaactt tcatatgaca aaccccgctt gatgatggta tagaaccatt
 taaatttaaa tatgctgttg gatttggttt gctaatattt taatgaggat ttttgtgtct
 gtgcttataa gcaatactgg tctgtagtgt tcttttctcg aatgtctttg cctgggtggt
 attaaggtaa ccctggcctc atagcatgtt aggatgcatt ctttcctctt ttatttttgg
 agtctttgtg aaggattgct gttaattctt tgtttgaaat aattcaccag taaagccacc
 tgggttttcc tctgtgggaa agtttattat tattattact aatactgctg caatctttac
 ttgttatagg tccatccaga ttttctaatc tttagtctgc tttattttgc taagaatttg
 tccatttcac caggcacggt ggctcatgcc tataatccca gcactttggg aggccgagga
 aggtggatca tgaggtcagg agatcgagac catcccgggt aacacggtga aaccccgtct
 ctactaaaaa tacaaaaaat tagctgggcg tggtggcggg cacctgtagt cccagctact
 cgggaggctg aggcaggaga atcgcgtgaa cccgggaggc ggagcttgca gtgagccgag
 atcgcaccac tgcactccag cctgggggac agagcgagac cccgtctcaa aaaaaaaaaa
 aaaagaattt gtccatttct tctaggttat ctaatttgtt tagtgtacaa agtattccct
 tgtcatcctt ttaatcaata taaagtcttt ctcccctgat tttagtaatt tgattcttct
 ctcctttttt tttttttctt tttggtcagt ttctctaagt ccttatcaat tttgttgatc
 ttttcaatga accaactcct ggtttcactg attttctcta ctgttttcta ttccatttat
 ttccactcta tctttattat ttccttctta ctacttgcct tgggtttagt ttgctcttct
 tttactaatt tttttttttt ttgagatgga gtcttgctct gtcgcccaag ctggagtgca
 gtggcacgat ttcagctcac tgcaacctct gcctcccggg ttcaaatgat tctcctgcct
 cagcttcccg agtagctggg actaagggca cgtgccacca ctcccagcta atttttttgt
 atttctaatg gagatggggt ttcaccatgc tggcaaggct ggtctcaaac tctctttttc
 taatttctta aggtcaaaag ttaggttatg atttcagttt tttcttcttg cttaaggtag
 gtgcttagtg ctatacattt tcctctgacc accacttttg ctgcatccat aagattttgc
 gtgttgtctt cattttcatt tgtctcaaag tatttttatt tttatttttt attttatttg
 agatggagtt tcgctcttgt cacctaggct ggagtgtaat ggcgcaatct cagctcactg
 cagcctctgc ctcccgggtt caagcgattc tcctgcctca gcctcccgag tagctgggat
 tacaggcacc tgccaccacg cctggctaat tttgtttgta ttattagtag agatgggggt
 ttcaccatgt tggccaggct ggtcttgaac tcctgacctc aggtgatccg cctgccaaag
 tgctgggatt ataggcgtga gccatgatgc tcagctgcaa agtattttaa atttcctttg
 taagcttttc tttgacccat tggttgctta agggcctgtt atttaatttc cacatatttg
 tgatttttcc aattttcctt ctgttattga cttctaattt cattccattg tgtcagagaa
 catactttat aatttcaacc ctttaaaaat tattgaaaaa ttattggagc tggtgtgttg
 gcacatacct gtaattccag ctactcagga ggctgagatg gaaacattgc ttaagcccag
 gagtttgagt ccagcctggg caacacagca aaaccccatc tttaaaaaaa caacaaactt
 actattcatt aagtggatca ttaaaaaaca aaaacaaaaa acacttgaaa cttgtttatg
 tcccagcata tggtctatcc tggagaatat ccatgtgcac tggagaagga ggtgtatcct
 gtttttgggt gtagtgttct gtagatgtct gtgccgagac cagctcggtc ggggagaccc
 taacccggcg gcgctagagg aattaaagac acacacagag aaatacagag gtgtgaagtg
 ggaaatcagg ggcctcacaa ccttcagagc tgacagccct gaacagagat ttacccacat
 atttagtaac agcaaaccag tcatagcatt gtttctatag atattcagtt aactaaaagt
 atcccttacg ggaaacgaag ggatgggcca aattaaagga ataggttggg ctagttaact
 gcatcaggaa cacgccctta agacacagat cgctcctgct attgtttgtg gcttaagaac
 gcctttcagc ggttttccgc cctgggcggg ccaggtgttc cttgccctca ttcccgtcaa
 cccacaacct cccagcgtgg gcgttagggc cattgtgaac atgtcacagt gctgcagaga
 tttgtttatg gccagtcttg gggccagttt atggccagat tttggggggg ggcctgctcc
 caacatgtct gttaggtctg tttggtttat aatgttgttc gagtcttcta tttactcgtt
 aatcttctgt ctctgtattg aaagcgggat attcagttgt ctacttctcc cttcagatct
 gtcagttttt tgtatatttc gaggctctgt tgttgggtgt gtgtatgttt atgattatta
 gatcttcttg gtttatcgtt ataaaaattt tcctttaatc tgcagtaata atttttgtgt
 aaagtctatt ttctgtgata tgagtgtaga cactccagtt GGTATAAGTG TAGACACTCC
 AGTTGATATG AATGTAGACA CTCCAGTTGG TATGAGTGTA GACACTCCAG TTGGTATGAG
 TGTAGACACT CCAGTTCGTA TCAGTGTAGA CACTCCAGTT GATATCAGTG TAGACACTCC
 AGTTGGTATG AGTGTAGACA CTCCAGTTGG TATGAGTGTA GACAATCCAG TTGATATCAG

  Submitted Frequency for ss9866207 back to top
There is no frequency submission for ss9866207.


  dbSNP summary of Genotypes for ss9866207 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120G=0.73333335
A=0.26666668G/G=0.58333331
A/G=0.30000001
A/A=0.11666667
Pr(chiSq=3.256,df=1)
=0.100
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.85555553
G=0.14444445A/A=0.75555557
A/G=0.20000000
G/G=0.04444445
Pr(chiSq=1.638,df=1)
=0.251
Genotype
Freq.
HapMap-JPT8484A=0.89285713
G=0.10714286A/A=0.80952382
A/G=0.16666667
G/G=0.02380952
Pr(chiSq=0.698,df=1)
=0.439
Genotype
Freq.
HapMap-YRI120120A=0.67500001
G=0.32499999A/G=0.48333332
A/A=0.43333334
G/G=0.08333334
Pr(chiSq=0.620,df=1)
=0.439
Genotype
Freq.

  Submitted individual genotype for ss9866207 back to top
There is no individual genotype data for ss9866207.

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