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Submitted SNP(ss) Details: ss9880476           
Submitter
HandleBCM_SSAHASNP
Submitter SNP IDchr1.NT_004321.15_181995
RefSNP(rs#)rs2788089
Submitted Batch IDBaylor-WGS-200306-1
Submitted DateJun 27, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJun 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBAYLOR-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:50866559position:-712quality:32

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss9880476|allelePos=983|len=1390|taxid=9606|alleles='G/A'|mol=Genomic
 GAAAAAAGAT GTGCTAGGAA AGACTGACAT TACAAAGCTG TAGTAGCTAC AATGAGATCA
 GATAAACTCT AAGGCAAAAA GCATTACCAG AGAGAAAGAT GAAAAGATTG GATTAACATT
 CTTAAAATTG ATGAATGTAA TTAAGCACAT ACATAGaata gagtagaaaa gcatatgaca
 ttatcaacag attcaggaaa agcacttgat gatacttaac atcaattcat aaactaggaa
 tggatggcag cttccttaat ctgacaaagt aaataaacaa aacttataac aaatatcaac
 catgatggtg aattgttgaa agctctctga gattggaaac aagacaagaa tgcctactac
 tataaattcc attcaaccct ggactagaga tcctggccag tgcaataagg caagaaaaag
 taacaaaagt tataactatt agaaatatta ttgtcataat ttgcagatga tatgattagg
 taactaaaaa accaaaaaga GCCTgcaGAT Ctattattaa aataataaga ttattaatta
 tatCTCTCCt ttgtttgaga cagaatctca ctctgttgcc caggctggag tgcagtggtg
 tgatctcagc ttacagtaat ctctgcctct ggggttcaag tgattctccc acctcagcct
 cctgagtagc tgggattaca ggtgtgtgcc accatgccca gctaattttt gtatttttgt
 agagatctgg ttttgccatg ttggccaggt tggtcttgaa ctcctgacct caggtaatcc
 acctgcctca gcctcccaaa gtgctaggat tacaggcatg agccaccatg actggccCTG
 CAAATATTTC TCTATATAGC aacaaactta aaaaatttta atcatttata gtagcatcaa
 aaatatcaaa tgccgagtaa tgaatcttgt gaaaggcagg caaaacctca tcacagaaaa
 atagagacct tcagagacat ta
 R
 agaaaacaga agtaaatcaa ggaataccat atttatagat tgaaaaaacc aattaggtca
 agttgtcaat cctttacaga ttgatttgta gcgttaatac aatcctaatc aaaatcctgt
 atggttttcc atgaaaactt acaggctaat ttttaaagtt atatgaaaaa tcaatgcatt
 tggaggagtc aattcattct tgaagaaCCA AAAGGGAGTT TGTACTCCAC AGACAGAAAT
 GAGTCTTACA CATCTGAAGG CATTAAGGCA GTTGGTATTG GCTCCAGGAT AGACACATGG
 ACAAAGGTCA GAGCAGAGAA GCAATCACCA AAGTGTGGAC TTTTGACGTA TGGCACAGCC
 CTGGGCCCTG GGCCCTGCTG GCGAAAGAGG CCTCTGTTTG GATCAGA

  Submitted Frequency for ss9880476 back to top
There is no frequency submission for ss9880476.


  dbSNP summary of Genotypes for ss9880476 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU118118A=0.95762712
G=0.04237288A/A=0.91525424
A/G=0.08474576
Pr(chiSq=0.010,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss9880476 back to top
There is no individual genotype data for ss9880476.

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