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Submitted SNP(ss) Details: ss99179619           
Submitter
HandleHUMANGENOME_JCVI
Submitter SNP ID1103675000102
RefSNP(rs#)rs12124819
Submitted Batch ID1.1
Submitted DateApr 03, 2008
Publication Cited17803354
First entry to dbSNPApr 3 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGS-ASSEMBLY-ATAC-MAPPING
Ascertainment Samplesize2
PopulationJ. Craig Venter
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss99179619|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 ATATCAAACG CTCACCAAGA AATTATAAAA TATTATTCAT AGCAGTTTTT TTCTTCAGTA
 TTTTATGGGC TAAGTGCAAT CTGGCTTTTG ATAACAACGG CTGAATAATA TTTGAGTTTG
 CCAGCTGAAA TGTCCTAAAT ATCTTATTGA TTCATTTATT GCCTCTTCAA ATAACAAGGC
 AACAAGACAG TGTCAGAATG CTCAGTGTTT TTACTTTTTT GTCTATCATG GGATGGTGTC
 AGTTTCAGTA
 R
 AAACGATGTC TCTTATTTTG GTCCACATTG TAGGAATCTC ACCAGTGACA CGCGTTTGTG
 AAAAGCTGTG AATATTCAGT GCCACAGGGT TAAACCTCGG TACAGAAGCG AGACCCTGCT
 GGGCAGAGAA AGGGTGACCT GGAAGGTGTG TGAGGGCCCC GCCCATGGGC CCCTGTGATG
 GTCATGGCCT CAAGAATCAC AGTCCAGGTG AGGCCCTGAA TATCCACAGC CAGGACCAGT
 TCCCTCTGCT

  Submitted Frequency for ss99179619 back to top
There is no frequency submission for ss99179619.


  dbSNP summary of Genotypes for ss99179619 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU216216A=0.77777779
G=0.22222222A/A=0.55555558
A/G=0.44444445
Pr(chiSq=3.483,df=1)
=0.100
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686A=0.97674417
G=0.02325581A/A=0.95348835
A/G=0.04651163
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898A=0.95918369
G=0.04081633A/A=0.91836733
A/G=0.08163265
Pr(chiSq=0.007,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH176176A=0.94318181
G=0.05681818A/A=0.88636363
A/G=0.11363637
Pr(chiSq=0.035,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180A=0.97777778
G=0.02222222A/A=0.95555556
A/G=0.04444445
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX100100A=0.86000001
G=0.14000000A/A=0.72000003
A/G=0.28000000
Pr(chiSq=0.345,df=1)
=0.584
Genotype
Freq.
HAPMAP-MKK286286A=0.99300700
G=0.00699301A/A=0.98601401
A/G=0.01398601
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI170170A=0.81176472
G=0.18823530A/A=0.62352943
A/G=0.37647060
Pr(chiSq=1.559,df=1)
=0.251
Genotype
Freq.

  Submitted individual genotype for ss99179619 back to top
There is no individual genotype data for ss99179619.