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Submitted SNP(ss) Details: ss99307538           
Submitter
HandleSHGC
Submitter SNP ID2932
RefSNP(rs#)rs71651692
Submitted Batch IDP_chrnb2.2008.shgc
Submitted DateApr 17, 2008
Publication CitedN.D.
First entry to dbSNPApr 17 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQUENCE
Ascertainment Samplesize48
PopulationP24
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss99307538|allelePos=301|len=601|taxid=9606|alleles='T/C'|mol=Genomic
 CTTTGGGGGA AGAGCAGGTC TCCATGAATC CTTGCAGAGT GGGTTCTTAG TCTCAAGTCA
 TCTCTGTGGA GCTGTGTAGA CTCTTTGGTC AGTGGTCTCA GAGAGGGGCT TTTCTATGAA
 GACATTAATC TGGGGCCTCC CTGGGGTTAA TCTAAGCATT TTGCAGTATC CTTAGGGATG
 TAGGGAGATA CTGGTTGGGC CTGGATTGTC CCATTTGCCT GGGGAGGGTG GGATGCTGGG
 TGGGCTCTCC TTGCCTGCTT ACTTTCGTCC TGCCTTTCCC CTGCCCAGGG GTGTGGGGTA
 Y
 GGATACAGAG GAGCGGCTGG TGGAGCATCT CNTGGATCCT TCCCGCTACA ACAAGCTTAT
 CCGCCCAGCC ACCAATGGCT CTGAGCTGGT GACAGTACAG CTTATGGTGT CACTGGCCCA
 GCTCATCAGT GTGGTGAGTA GAGGTCCCAG GCTCTCTGCC CAGCTACTGA AATCAGCCCC
 GCCAAAATGT GTTAATGCTT GTGTGCTTCC TCCCCTGGTG TTTCCAAGGC TTGGGGAGGT
 GTGAGAGGGA CCCTGGGTGG TGGCANTGAC CCCACAGGCT TAGGGGCCTT CTCGGCAGCC

  Submitted Frequency for ss99307538 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
P24
NORTH AMERICA
48C=0.98000002
T=0.02000000
P_chrnb2.2008.shgcSHGC


  dbSNP summary of Genotypes for ss99307538 back to top
No sufficient data to compute Hardy-weinberg probability for ss99307538.


  Submitted individual genotype for ss99307538 back to top
There is no individual genotype data for ss99307538.