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View Population Frequency Batch
Submitter Handle:PERLEGEN
Submitter Batch ID:PGI_05_08-SEP-2009
Submitter Method ID:FLX_FLAP3
Citation:Resequencing of nicotinic acetylcholine receptor genes and association of rare and common variants wit nicotine dependence
Comment:not supplied
Batch Total SubSNP(ss) Count:139


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Batch Summary: this batch submitted frequency for 1 populations across 139 subsnp.
Submitter Population
Handle|ID
Total ss#
Count
Total rs#
Count
View Frequency
PERLEGEN|PGI_05_PANEL 139 137 detail


Submitter Population Handle|ID: PERLEGEN|PGI_05_PANEL
SubSNP(ss) Samplesize Type Frequency RefSNP(rs) Chromosome ChrPos Contig
Accession
Contig
Position
ss161151672 860 GTY CC=0.87 /CT=0.12 /NN=0 /TT=0 rs4292956 1 154576470 NT_004487 11391883
ss161151673 860 GTY AA=0.05 /GA=0.39 /GG=0.56 /NN=0 rs2072661 1 154576404 NT_004487 11391817
ss161151674 860 GTY AA=0 /GA=0 /GG=1 /NN=0 rs78691486 1 154576344 NT_004487 11391757
ss161151675 860 GTY AA=0 /GA=0.01 /GG=0.93 /NN=0.07 rs79646221 1 154571518 NT_004487 11386931
ss161151676 860 GTY CC=0.99 /CT=0 /NN=0 /TT=0 rs75760566 1 154571347 NT_004487 11386760
ss161151677 860 GTY GG=0.94 /GT=0 /NN=0.06 /TT=0 rs71651695 1 154571135 NT_004487 11386548
ss161151678 860 GTY AA=0 /CA=0 /CC=1 /NN=0 rs11803785 1 154575739 NT_004487 11391152
ss161151679 860 GTY AA=0 /GA=0.01 /GG=0.99 /NN=0 rs8192485 1 154569740 NT_004487 11385153
ss161151680 860 GTY CC=1 /CT=0 /NN=0 /TT=0 rs71651692 1 154569474 NT_004487 11384887
ss161151681 860 GTY CC=0.56 /NN=0 /TC=0.39 /TT=0.05 rs2072660 1 154576245 NT_004487 11391658
ss161151682 860 GTY AA=1 /AG=0 /GG=0 /NN=0 rs3926124 1 154569616 NT_004487 11385029
ss161151683 860 GTY AA=0 /GA=0.04 /GG=0.96 /NN=0 rs56229264 8 27463672 NT_167187 15179327
ss161151684 860 GTY AA=0 /GA=0 /GG=1 /NN=0 rs77769511 8 27463666 NT_167187 15179321
ss161151685 860 GTY AA=0 /GA=0 /GG=1 /NN=0 rs76140563 8 27463570 NT_167187 15179225
ss161151686 860 GTY GG=1 /GT=0 /NN=0 /TT=0 rs79996627 8 27463446 NT_167187 15179101
ss161151687 860 GTY AA=0.95 /AG=0 /GG=0 /NN=0.04 rs74929100 8 27463401 NT_167187 15179056
ss161151688 860 GTY CC=1 /CT=0 /NN=0 /TT=0 rs78561863 8 27463204 NT_167187 15178859
ss161151689 860 GTY AA=0 /GA=0.06 /GG=0.94 /NN=0 rs56298562 8 27463119 NT_167187 15178774
ss161151690 860 GTY GG=0.99 /GT=0.01 /NN=0 /TT=0 rs56344740 8 27463009 NT_167187 15178664
ss161151691 860 GTY CC=1 /CT=0 /NN=0 /TT=0 rs78682427 8 42736490 NT_167187 30452145
ss161151692 860 GTY CC=0.93 /CT=0.07 /NN=0 /TT=0 rs4952 8 42731922 NT_167187 30447577
ss161151693 860 GTY AA=0 /GA=0 /GG=1 /NN=0 rs78866303 8 42731878 NT_167187 30447533
ss161151694 860 GTY CC=0 /NN=0.07 /TC=0 /TT=0.93 rs76467184 8 42731835 NT_167187 30447490
ss161151695 860 GTY CC=0 /GC=0 /GG=0.99 /NN=0 rs80342906 8 42765146 NT_167187 30480801
ss161151696 860 GTY GG=0.05 /GT=0.36 /NN=0 /TT=0.58 rs13277524 8 42694914 NT_167187 30410569
ss161151697 860 GTY AA=0.03 /AG=0.29 /GG=0.67 /NN=0 rs13280301 8 42694874 NT_167187 30410529
ss161151698 860 GTY AA=0.58 /GA=0.36 /GG=0.05 /NN=0 rs13277254 8 42694839 NT_167187 30410494
ss161151699 860 GTY CC=0 /NN=0 /TC=0 /TT=1 rs75038303 8 42694778 NT_167187 30410433
ss161151700 860 GTY CC=0 /NN=0 /TC=0 /TT=1 rs76092830 8 42757004 NT_167187 30472659
ss161151701 860 GTY AA=0 /GA=0 /GG=0.97 /NN=0.02 rs74772771 8 27469915 NT_167187 15185570
30 of 139 subsnp's starting at ss161151701. ss# starting at ss