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View SNP Submission Batch
Submitter Handle:GMI
Submitter Batch ID:2009AK_SNP
Submitter Method ID:DIRECT DNA SEQUENCING
Citation:not supplied
Population:AK_Koreans
Comment:The SNPs were called by sequencing data with coverage 25.8x from Illumina Genome Analyzer IIx instrument. The filter condition used in calling of SNPs is same as that of paper "A highly annotated whole-genome sequence of a Korean in dividual" published in NATURE 2009.
Batch Total SubSNP(ss) Count:8344402


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SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss275679841 GMI_AK_SNP_1 A/C 2 rs201752861 0 1 10177 NT_077402.3 177
ss275679842 GMI_AK_SNP_2 C/T 2 rs201694901 0 1 10180 NT_077402.3 180
ss275679843 GMI_AK_SNP_3 A/C 2 rs200279319 0 1 10231 NT_077402.3 231
ss275679844 GMI_AK_SNP_4 A/T 2 rs148908337 0 1 10248 NT_077402.3 248
ss275679845 GMI_AK_SNP_5 A/C 2 rs199706086 0 1 10250 NT_077402.3 250
ss275679846 GMI_AK_SNP_6 A/C 2 rs200940095 0 1 10259 NT_077402.3 259
ss275679847 GMI_AK_SNP_7 C/T 2 rs112750067 0 1 10327 NT_077402.3 327
ss275679848 GMI_AK_SNP_8 A/C 2 rs199606420 0 1 10493 NT_077402.3 493
ss275679849 GMI_AK_SNP_9 A/G 2 rs200782791 0 1 10603 NT_077402.3 603
ss275679850 GMI_AK_SNP_10 C/G 2 rs202068986 0 1 12214 NT_077402.3 2214
ss275679851 GMI_AK_SNP_11 A/G 2 rs199896944 0 1 13504 NT_077402.3 3504
ss275679852 GMI_AK_SNP_12 C/T 2 rs28428499 0 1 13838 NT_077402.3 3838
ss275679853 GMI_AK_SNP_13 A/C 2 rs77233895 0 1 13896 NT_077402.3 3896
ss275679854 GMI_AK_SNP_14 A/G 2 rs6682375 0 1 14907 NT_077402.3 4907
ss275679855 GMI_AK_SNP_15 A/G 2 rs6682385 0 1 14930 NT_077402.3 4930
ss275679856 GMI_AK_SNP_16 A/G 2 rs11580262 0 1 15118 NT_077402.3 5118
ss275679857 GMI_AK_SNP_17 A/G 2 rs71230572 0 1 15190 NT_077402.3 5190
ss275679858 GMI_AK_SNP_18 G/T 2 rs3982632 1 1 15211 NT_077402.3 5211
ss275679859 GMI_AK_SNP_19 A/T 2 rs2758118 1 1 15274 NT_077402.3 5274
ss275679860 GMI_AK_SNP_20 G/T 2 rs78376469 0 1 16103 NT_077402.3 6103
ss275679861 GMI_AK_SNP_21 G/T 2 rs80224649 0 1 16125 NT_077402.3 6125
ss275679862 GMI_AK_SNP_22 C/G 2 rs11489794 0 1 16257 NT_077402.3 6257
ss275679863 GMI_AK_SNP_23 C/T 2 rs2747966 1 1 16298 NT_077402.3 6298
ss275679864 GMI_AK_SNP_24 C/T 2 rs148220436 0 1 16378 NT_077402.3 6378
ss275679865 GMI_AK_SNP_25 C/G 2 rs3210724 1 1 16495 NT_077402.3 6495
ss275679866 GMI_AK_SNP_26 A/G 2 rs150723783 0 1 16497 NT_077402.3 6497
ss275679867 GMI_AK_SNP_27 C/T 2 rs15642 0 1 16534 NT_077402.3 6534
ss275679868 GMI_AK_SNP_28 A/G 2 rs12405900 0 1 16571 NT_077402.3 6571
ss275679869 GMI_AK_SNP_29 A/C 2 rs200784459 0 1 17398 NT_077402.3 7398
ss275679870 GMI_AK_SNP_30 A/G 2 rs62101625 0 1 19004 NT_077402.3 9004
30 of 8344402 subsnp's starting at ss275679841. ss# starting at ss