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View SNP Submission Batch
Submitter Handle:TISHKOFF
Submitter Batch ID:Lachance2012Cell_complex_substitution
Submitter Method ID:COMPLETE GENOMICS
Citation:Evolutionary History and Adaptation from High-Coverage Whole-Genome Sequences of Diverse African Hunter-Gatherers
Comment:10 Pygmy, 10 Hadza, and 10 Sandawe chromosomes were sequenced to detect varation
Batch Total SubSNP(ss) Count:244011


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss553753263 sub_chr1_565004-565006 AAC/TAT 30 rs386627398 0 1 629624 NT_032977.10 43636
ss553753328 sub_chr1_567032-567033 CT/TC 30 rs386627399 0 1 631652 NT_032977.10 45664
ss553753365 sub_chr1_713465-713466 C/GT 30 rs386627400 0 1 778085 NT_032977.10 192097
ss553753436 sub_chr1_767778-767780 CAA/GAG 30 rs386627401 0 1 832398 NT_032977.10 246410
ss553753498 sub_chr1_767811-767812 CT/GC 30 rs386627402 0 1 832431 NT_032977.10 246443
ss553753563 sub_chr1_770075-770077 CAC/TAT 30 rs386627403 0 1 834695 NT_032977.10 248707
ss553753630 sub_chr1_799447-799449 CCA/TC 30 rs386627404 0 1 864067 NT_032977.10 278079
ss553753703 sub_chr1_826136-826144 AGGGGGCAG/GGAGGACAA 30 rs386627405 0 1 890756 NT_032977.10 304768
ss553753801 sub_chr1_833641-833663 CACACAGAAATACAGAGGAGTGG/TACACAGAAATACAGAGGTGTGA 30 rs386627406 0 1 898261 NT_032977.10 312273
ss553753887 sub_chr1_839528-839529 AT/GG 30 rs386627407 0 1 904148 NT_032977.10 318160
ss553753941 sub_chr1_857176-857177 AC/GT 30 rs386627408 0 1 921796 NT_032977.10 335808
ss553753975 sub_chr1_863499-863501 CGC/TGT 30 rs386627409 0 1 928119 NT_032977.10 342131
ss553754017 sub_chr1_863588-863590 ACG/TCA 30 rs386627410 0 1 928208 NT_032977.10 342220
ss553754097 sub_chr1_863644-863645 CA/TG 30 rs748973112 0 1 928264 NT_032977.10 342276
ss553754163 sub_chr1_863750-863751 CA/GG 30 rs386627412 0 1 928370 NT_032977.10 342382
ss553754227 sub_chr1_864755-864757 AGG/GGA 30 rs386627413 0 1 929375 NT_032977.10 343387
ss553754303 sub_chr1_866553-866554 CC/TG 30 rs386627414 0 1 931173 NT_032977.10 345185
ss553754340 sub_chr1_872782-872784 A/CCC 30 rs376312599 0 1 937402 NT_032977.10 351414
ss553754383 sub_chr1_884424-884426 ACAACAGCAAAG/GCA 30 rs386627415 0 1 949044 NT_032977.10 363056
ss553754459 sub_chr1_885698-885699 CA/TG 30 rs386627416 0 1 950318 NT_032977.10 364330
ss553754502 sub_chr1_886180-886186 ACTGTTC/CTTTCAG 30 rs386627417 0 1 950800 NT_032977.10 364812
ss553754593 sub_chr1_889158-889159 CC/GA 30 rs369883627 1 1 953778 NT_032977.10 367790
ss553754661 sub_chr1_902763-902764 CC/G 30 rs368691716 0 1 967383 NT_032977.10 381395
ss553754688 sub_chr1_902764-902766 A/CCC 30 rs386627419 0 1 967384 NT_032977.10 381396
ss553754738 sub_chr1_904751-904752 AC/GT 30 rs386627420 0 1 969371 NT_032977.10 383383
ss553754779 sub_chr1_905244-905251 CGTGTACG/TGTGTACA 30 rs386627421 0 1 969864 NT_032977.10 383876
ss553754844 sub_chr1_910438-910473 ACCACAGGGCAGCACGGGAGACGTTGACACCACCGG/GCCACAGGGCAGCACGGGAGACGTTGACACCACCGA 30 rs386627422 0 1 975058 NT_032977.10 389070
ss553754921 sub_chr1_920648-920649 CA/TG 30 rs386627423 0 1 985268 NT_032977.10 399280
ss553754970 sub_chr1_923977-923977 A/GAAAG 30 rs368780890 0 1 988597 NT_032977.10 402609
ss553755013 sub_chr1_928982-928982 C/G 30 rs74898532 0 1 993602 NT_032977.10 407614
30 of 244011 subsnp's starting at ss553753263. ss# starting at ss

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