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View SNP Submission Batch
Submitter Handle:
SSMP
Submitter Batch ID:
2012_July snp
Submitter Method ID:
ILLUMINAHISEQ2000-SEQUENCING
Citation:
not supplied
Population:
SSM
Comment:
Illumina Hiseq 2000 whole genome sequencing on 96 South East Asian Malays (Singapore) with 30X coverage, 2x100 paired-end reads and insert sizes between 300 and 400
Batch Total SubSNP(ss) Count:
13989798
SubSNP(ss)
Submitter
SNP_ID
SNP
Allele
Samplesize
RefSNP(rs)
ss2rs
Orien
Chr
ChrPos
Contig
Accession
Contig
Pos
ss647514732
1_10469
C/G
192
rs370233998
0
1
10469
NT_077402.3
469
ss647514733
1_10583
A/G
192
rs58108140
0
1
10583
NT_077402.3
583
ss647514734
1_14653
C/T
192
rs62635297
0
1
14653
NT_077402.3
4653
ss647514735
1_14673
C/G
192
rs4690
0
1
14673
NT_077402.3
4673
ss647514736
1_14699
C/G
192
rs62635298
0
1
14699
NT_077402.3
4699
ss647514737
1_14717
A/G
192
rs377122907
0
1
14717
NT_077402.3
4717
ss647514738
1_14907
A/G
192
rs6682375
0
1
14907
NT_077402.3
4907
ss647514739
1_14930
A/G
192
rs6682385
0
1
14930
NT_077402.3
4930
ss647514740
1_14933
A/G
192
rs199856693
0
1
14933
NT_077402.3
4933
ss647514741
1_14976
A/G
192
rs71252251
1
1
14976
NT_077402.3
4976
ss647514742
1_15118
A/G
192
rs11580262
0
1
15118
NT_077402.3
5118
ss647514743
1_15208
A/G
192
rs368345873
0
1
15208
NT_077402.3
5208
ss647514744
1_15211
G/T
192
rs3982632
1
1
15211
NT_077402.3
5211
ss647514745
1_15774
A/G
192
rs374029747
0
1
15774
NT_077402.3
5774
ss647514746
1_15817
G/T
192
rs2691316
1
1
15817
NT_077402.3
5817
ss647514747
1_15820
G/T
192
rs2691315
1
1
15820
NT_077402.3
5820
ss647514748
1_15922
A/G
192
rs375964566
0
1
15922
NT_077402.3
5922
ss647514749
1_15956
A/G
192
rs112448831
0
1
15956
NT_077402.3
5956
ss647514750
1_16068
C/T
192
rs372319358
0
1
16068
NT_077402.3
6068
ss647514751
1_16103
G/T
192
rs78376469
0
1
16103
NT_077402.3
6103
ss647514752
1_16378
C/T
192
rs148220436
0
1
16378
NT_077402.3
6378
ss647514753
1_16487
C/T
192
rs373516660
0
1
16487
NT_077402.3
6487
ss647514754
1_17222
A/G
192
rs200978805
0
1
17222
NT_077402.3
7222
ss647514755
1_17365
C/G
192
rs369606208
0
1
17365
NT_077402.3
7365
ss647514756
1_17407
A/G
192
rs372841554
0
1
17407
NT_077402.3
7407
ss647514757
1_17452
C/T
192
rs200503540
0
1
17452
NT_077402.3
7452
ss647514758
1_17538
A/C
192
rs71260068
0
1
17538
NT_077402.3
7538
ss647514759
1_17556
C/T
192
rs374545136
0
1
17556
NT_077402.3
7556
ss647514760
1_17594
C/T
192
rs377698370
0
1
17594
NT_077402.3
7594
ss647514761
1_17614
A/G
192
rs201057270
0
1
17614
NT_077402.3
7614
30 of 13989798 subsnp's starting at ss647514732.
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ss# starting at ss