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View SNP Submission Batch
Submitter Handle:SSIP
Submitter Batch ID:2013_Nov_indels
Submitter Method ID:ILLUMINAHISEQ2000-SEQUENCING
Citation:not supplied
Population:SSI
Comment:Illumina Hiseq 2000 whole genome sequencing on 36 South Asian Indians living in Singapore at 30X coverage, 2x100 paired-end reads and insert sizes between 300 and 400
Batch Total SubSNP(ss) Count:417259


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss947011634 SSIP_indels_113289 -/CT 72 rs538791886 0 1 13290 NT_077402.3 3290
ss947011635 SSIP_indels_115903 -/C 72 rs557514207 0 1 15903 NT_077402.3 5903
ss947011636 SSIP_indels_128326 -/T 72 rs376400995 0 1 28327 NT_077402.3 18327
ss947011637 SSIP_indels_130867 -/CTCT 72 rs369270395 0 1 30868 NT_077402.3 20868
ss947011638 SSIP_indels_152188 -/TAAT 72 rs554696226 0 1 52188 NT_077402.3 42188
ss947011639 SSIP_indels_154710 -/T 72 rs573184866 0 1 54710 NT_077402.3 44710
ss947011640 SSIP_indels_161871 -/T 72 rs368183979 0 1 61871 NT_077402.3 51871
ss947011641 SSIP_indels_162094 -/T 72 rs565195228 0 1 62095 NT_077402.3 52095
ss947011642 SSIP_indels_162239 -/AC 72 rs375143083 0 1 62240 NT_077402.3 52240
ss947011643 SSIP_indels_162297 -/CTTC 72 rs544370662 0 1 62297 NT_077402.3 52297
ss947011644 SSIP_indels_183847 -/AA 72 rs563058974 0 1 83848 NT_077402.3 73848
ss947011645 SSIP_indels_183853 -/G 72 rs530553492 0 1 83853 NT_077402.3 73853
ss947011646 SSIP_indels_183873 -/GAG 72 rs549040818 0 1 83874 NT_077402.3 73874
ss947011647 SSIP_indels_183965 -/AAG 72 rs560763486 0 1 83966 NT_077402.3 73966
ss947011648 SSIP_indels_198823 -/TCTG 72 rs368820819 0 1 98824 NT_077402.3 88824
ss947011649 SSIP_indels_1104160 -/ACAC 72 rs372078516 0 1 104160 NT_077402.3 94160
ss947011650 SSIP_indels_1109575 -/GT 72 rs571540520 0 1 109579 NT_077402.3 99579
ss947011651 SSIP_indels_1120507 -/T 72 rs538854122 0 1 120507 NT_077402.3 110507
ss947011652 SSIP_indels_1123088 -/TA 72 rs373187151 0 1 123089 NT_077402.3 113089
ss947011653 SSIP_indels_1129010 -/ATG 72 rs377161483 0 1 129011 NT_077402.3 119011
ss947011654 SSIP_indels_1136644 -/G 72 rs370365546 0 1 136645 NT_077402.3 126645
ss947011655 SSIP_indels_1150558 -/CTC 72 rs370480821 0 1 150559 NT_077402.3 140559
ss947011656 SSIP_indels_1231153 -/TT 72 rs573163940 0 1 261403 NT_187170.1 3737
ss947011657 SSIP_indels_1250236 -/T 72 rs377282247 0 1 280486 NT_187170.1 22820
ss947011658 SSIP_indels_1267227 -/TAA 72 rs374780253 0 1 297477 NT_187170.1 39811
ss947011659 SSIP_indels_1531808 -/CA 72 rs371880808 0 1 596429 NT_032977.10 10441
ss947011660 SSIP_indels_1531954 -/ATAT 72 rs544487685 0 1 596575 NT_032977.10 10587
ss947011661 SSIP_indels_1532450 -/ATC 72 rs556508400 0 1 597070 NT_032977.10 11082
ss947011662 SSIP_indels_1533162 -/A 72 rs574966667 0 1 597782 NT_032977.10 11794
ss947011663 SSIP_indels_1534314 -/GG 72 rs542368122 0 1 598936 NT_032977.10 12948
30 of 417259 subsnp's starting at ss947011634. ss# starting at ss

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