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View SNP Submission Batch
Submitter Handle:
MCHAISSO
Submitter Batch ID:
NA19240
Submitter Method ID:
UNIFIEDCALLSET
Citation:
Multi-platform discovery of haplotype-resolved structural variation in human genomes
Population:
CHS-PUR-YRI
Comment:
not supplied
Batch Total SubSNP(ss) Count:
1033467
Method Extra Detail:
THIS IS UNIFIED CALLSET BETWEEN READ-BASED ILLUMINA CALLS AND ASSEMBLY BASED PACBIO CALLS
SubSNP(ss)
Submitter
SNP_ID
SNP
Allele
Samplesize
RefSNP(rs)
ss2rs
Orien
Chr
ChrPos
Contig
Accession
Contig
Pos
ss2137543781
NA192401
-/ACCCT
46
rs1462685959
0
1
10110
NT_077402.3
110
ss3065282376
NA192402
-/TGG
46
rs757557694
0
1
28590
NT_077402.3
18590
ss3065282377
NA192403
-/C
46
rs780660371
0
1
29279
NT_077402.3
19279
ss3065282378
NA192404
-/C
46
rs1326485052
0
1
39487
NT_077402.3
29487
ss3065282379
NA192405
-/A
46
rs200430748
0
1
47190
NT_077402.3
37190
ss3065282380
NA192406
-/TG
46
rs1453393205
0
1
50481
NT_077402.3
40481
ss3065282381
NA192407
-/AT
46
rs199502715
0
1
53235
NT_077402.3
43235
ss3065282382
NA192408
-/A
46
rs1190929441
0
1
53708
NT_077402.3
43708
ss3065282383
NA192409
-/TTTC
46
rs773293602
0
1
54713
NT_077402.3
44713
ss3065282384
NA1924010
-/CTTC
46
rs544370662
0
1
62297
NT_077402.3
52297
ss3065282385
NA1924011
-/TATATA
46
rs201684885
0
1
66161
NT_077402.3
56161
ss3065282386
NA1924012
-/ATTATATTATATAATATATAATATAAATATAATATAA
46
rs1487342636
0
1
66239
NT_077402.3
56239
ss3065282387
NA1924013
-/TT
46
rs560481224
0
1
66436
NT_077402.3
56436
ss3065282388
NA1924014
-/TATATATTATATAAATA
46
rs1317121599
0
1
66598
NT_077402.3
56598
ss3065282389
NA1924015
-/AA
46
rs550749506
0
1
82134
NT_077402.3
72134
ss3065282390
NA1924016
-/AA
46
rs550749506
0
1
82134
NT_077402.3
72134
ss3065282391
NA1924017
-/AGAAAGAA
46
rs1394597135
0
1
83829
NT_077402.3
73829
ss3065282392
NA1924018
-/AGAG
46
rs1194145338
0
1
83912
NT_077402.3
73912
ss3065282393
NA1924019
-/GAAA
46
rs368742622
0
1
83945
NT_077402.3
73945
ss3065282394
NA1924020
-/AAAGAAAGAAAGAAAGAAAA
46
rs1336586596
0
1
83994
NT_077402.3
73994
ss3065282395
NA1924021
-/AAAGAAAGAAAGAAAGAAAA
46
rs1336586596
0
1
83994
NT_077402.3
73994
ss3065282396
NA1924022
-/AAAA
46
rs1341255223
0
1
84002
NT_077402.3
74002
ss3065282397
NA1924023
-/AAAA
46
rs1341255223
0
1
84002
NT_077402.3
74002
ss3065282398
NA1924024
-/AAAGA
46
rs1157258639
0
1
84018
NT_077402.3
74018
ss3065282399
NA1924025
-/AAGAAAGAAAG
46
rs1362537270
0
1
84020
NT_077402.3
74020
ss3065282400
NA1924026
-/AAG
46
rs1462322794
0
1
84028
NT_077402.3
74028
ss3065282401
NA1924027
-/AAAGA
46
rs372284318
0
1
84030
NT_077402.3
74030
ss3065282402
NA1924028
-/AAAGA
46
rs372284318
0
1
84030
NT_077402.3
74030
ss3065282403
NA1924029
-/T
46
rs375085441
0
1
91551
NT_077402.3
81551
ss3065282404
NA1924030
-/AA
46
rs1280779286
0
1
92664
NT_077402.3
82664
30 of 1033467 subsnp's starting at ss2137543781.
10
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ss# starting at ss