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View SNP Submission Batch
Submitter Handle:PACBIO
Submitter Batch ID:GATKHC
Submitter Method ID:SRX5327410
Citation:Highly-accurate long-read sequencing improves variant detection and assembly of a human genome
Comment:Variant calls in SRX5327410 against GRCh37 (hs37d5) using GATK HaplotypeCaller v4.0.6.0 with --pcr-indel-model AGGRESSIVE.
Batch Total SubSNP(ss) Count:5678016


all, sort by
SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss2137544031 GATKHC.1 A/C 2 N.D. N.D.
ss3783301452 GATKHC.2 C/T 2 N.D. N.D.
ss3783301453 GATKHC.3 A/G 2 N.D. N.D.
ss3783301454 GATKHC.4 A/C 2 N.D. N.D.
ss3783301455 GATKHC.5 C/T 2 N.D. N.D.
ss3783301456 GATKHC.6 A/G 2 N.D. N.D.
ss3783301457 GATKHC.7 A/G 2 N.D. N.D.
ss3783301458 GATKHC.8 C/T 2 N.D. N.D.
ss3783301459 GATKHC.9 C/T 2 N.D. N.D.
ss3783301460 GATKHC.10 C/T 2 N.D. N.D.
ss3783301461 GATKHC.11 G/T 2 N.D. N.D.
ss3783301462 GATKHC.12 A/G 2 N.D. N.D.
ss3783301463 GATKHC.13 A/G 2 N.D. N.D.
ss3783301464 GATKHC.14 A/T 2 N.D. N.D.
ss3783301465 GATKHC.15 C/T 2 N.D. N.D.
ss3783301466 GATKHC.16 A/G 2 N.D. N.D.
ss3783301467 GATKHC.17 -/AGAC 2 N.D. N.D.
ss3783301468 GATKHC.18 C/T 2 N.D. N.D.
ss3783301469 GATKHC.19 C/T 2 N.D. N.D.
ss3783301470 GATKHC.20 G/T 2 N.D. N.D.
ss3783301471 GATKHC.21 A/C 2 N.D. N.D.
ss3783301472 GATKHC.22 A/C 2 N.D. N.D.
ss3783301473 GATKHC.23 C/T 2 N.D. N.D.
ss3783301474 GATKHC.24 A/G 2 N.D. N.D.
ss3783301475 GATKHC.25 C/T 2 N.D. N.D.
ss3783301476 GATKHC.26 A/G 2 N.D. N.D.
ss3783301477 GATKHC.27 C/T 2 N.D. N.D.
ss3783301478 GATKHC.28 G/T 2 N.D. N.D.
ss3783301479 GATKHC.29 A/G 2 N.D. N.D.
ss3783301480 GATKHC.30 C/T 2 N.D. N.D.
30 of 5678016 subsnp's starting at ss2137544031. ss# starting at ss