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View SNP Submission Batch
Submitter Handle:
PACBIO
Submitter Batch ID:
GATKHC
Submitter Method ID:
SRX5327410
Citation:
Highly-accurate long-read sequencing improves variant detection and assembly of a human genome
Comment:
Variant calls in SRX5327410 against GRCh37 (hs37d5) using GATK HaplotypeCaller v4.0.6.0 with --pcr-indel-model AGGRESSIVE.
Batch Total SubSNP(ss) Count:
5678016
SubSNP(ss)
Submitter
SNP_ID
SNP
Allele
Samplesize
RefSNP(rs)
ss2rs
Orien
Chr
ChrPos
Contig
Accession
Contig
Pos
ss2137544031
GATKHC.1
A/C
2
N.D.
N.D.
ss3783301452
GATKHC.2
C/T
2
N.D.
N.D.
ss3783301453
GATKHC.3
A/G
2
N.D.
N.D.
ss3783301454
GATKHC.4
A/C
2
N.D.
N.D.
ss3783301455
GATKHC.5
C/T
2
N.D.
N.D.
ss3783301456
GATKHC.6
A/G
2
N.D.
N.D.
ss3783301457
GATKHC.7
A/G
2
N.D.
N.D.
ss3783301458
GATKHC.8
C/T
2
N.D.
N.D.
ss3783301459
GATKHC.9
C/T
2
N.D.
N.D.
ss3783301460
GATKHC.10
C/T
2
N.D.
N.D.
ss3783301461
GATKHC.11
G/T
2
N.D.
N.D.
ss3783301462
GATKHC.12
A/G
2
N.D.
N.D.
ss3783301463
GATKHC.13
A/G
2
N.D.
N.D.
ss3783301464
GATKHC.14
A/T
2
N.D.
N.D.
ss3783301465
GATKHC.15
C/T
2
N.D.
N.D.
ss3783301466
GATKHC.16
A/G
2
N.D.
N.D.
ss3783301467
GATKHC.17
-/AGAC
2
N.D.
N.D.
ss3783301468
GATKHC.18
C/T
2
N.D.
N.D.
ss3783301469
GATKHC.19
C/T
2
N.D.
N.D.
ss3783301470
GATKHC.20
G/T
2
N.D.
N.D.
ss3783301471
GATKHC.21
A/C
2
N.D.
N.D.
ss3783301472
GATKHC.22
A/C
2
N.D.
N.D.
ss3783301473
GATKHC.23
C/T
2
N.D.
N.D.
ss3783301474
GATKHC.24
A/G
2
N.D.
N.D.
ss3783301475
GATKHC.25
C/T
2
N.D.
N.D.
ss3783301476
GATKHC.26
A/G
2
N.D.
N.D.
ss3783301477
GATKHC.27
C/T
2
N.D.
N.D.
ss3783301478
GATKHC.28
G/T
2
N.D.
N.D.
ss3783301479
GATKHC.29
A/G
2
N.D.
N.D.
ss3783301480
GATKHC.30
C/T
2
N.D.
N.D.
30 of 5678016 subsnp's starting at ss2137544031.
10
30
50
100
ss# starting at ss