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View SNP Submission Batch
Submitter Handle:PACBIO
Submitter Batch ID:DeepVariant-CCS-hapsort
Submitter Method ID:SRX5327410
Citation:Highly-accurate long-read sequencing improves variant detection and assembly of a human genome
Comment:Variant calls in SRX5327410 against GRCh37 (hs37d5) using Google DeepVariant v0.7.1 and a model trained on haplotype-sorted PacBio CCS reads.
Batch Total SubSNP(ss) Count:4884540


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss2137544033 DeepVariant-CCS-hapsort.1 A/C 2 N.D. N.D.
ss3793852057 DeepVariant-CCS-hapsort.2 C/T 2 N.D. N.D.
ss3793852058 DeepVariant-CCS-hapsort.3 A/G 2 N.D. N.D.
ss3793852059 DeepVariant-CCS-hapsort.4 A/C 2 N.D. N.D.
ss3793852060 DeepVariant-CCS-hapsort.5 C/T 2 N.D. N.D.
ss3793852061 DeepVariant-CCS-hapsort.6 A/G 2 N.D. N.D.
ss3793852062 DeepVariant-CCS-hapsort.7 A/G 2 N.D. N.D.
ss3793852063 DeepVariant-CCS-hapsort.8 C/T 2 N.D. N.D.
ss3793852064 DeepVariant-CCS-hapsort.9 C/T 2 N.D. N.D.
ss3793852065 DeepVariant-CCS-hapsort.10 C/T 2 N.D. N.D.
ss3793852066 DeepVariant-CCS-hapsort.11 -/ATG 2 N.D. N.D.
ss3793852067 DeepVariant-CCS-hapsort.12 G/T 2 N.D. N.D.
ss3793852068 DeepVariant-CCS-hapsort.13 A/G 2 N.D. N.D.
ss3793852069 DeepVariant-CCS-hapsort.14 A/G 2 N.D. N.D.
ss3793852070 DeepVariant-CCS-hapsort.15 A/T 2 N.D. N.D.
ss3793852071 DeepVariant-CCS-hapsort.16 C/T 2 N.D. N.D.
ss3793852072 DeepVariant-CCS-hapsort.17 A/G 2 N.D. N.D.
ss3793852073 DeepVariant-CCS-hapsort.18 C/T 2 N.D. N.D.
ss3793852074 DeepVariant-CCS-hapsort.19 C/T 2 N.D. N.D.
ss3793852075 DeepVariant-CCS-hapsort.20 G/T 2 N.D. N.D.
ss3793852076 DeepVariant-CCS-hapsort.21 A/C 2 N.D. N.D.
ss3793852077 DeepVariant-CCS-hapsort.22 A/C 2 N.D. N.D.
ss3793852078 DeepVariant-CCS-hapsort.23 C/T 2 N.D. N.D.
ss3793852079 DeepVariant-CCS-hapsort.24 A/G 2 N.D. N.D.
ss3793852080 DeepVariant-CCS-hapsort.25 C/T 2 N.D. N.D.
ss3793852081 DeepVariant-CCS-hapsort.26 C/T 2 N.D. N.D.
ss3793852082 DeepVariant-CCS-hapsort.27 A/G 2 N.D. N.D.
ss3793852083 DeepVariant-CCS-hapsort.28 C/T 2 N.D. N.D.
ss3793852084 DeepVariant-CCS-hapsort.29 C/T 2 N.D. N.D.
ss3793852085 DeepVariant-CCS-hapsort.30 A/G 2 N.D. N.D.
30 of 4884540 subsnp's starting at ss2137544033. ss# starting at ss