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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-1-99
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:not supplied
Batch Total SubSNP(ss) Count:15134
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001SUCCESS_RATE:99


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss29051 OVLP-30 C/T 4 rs29447 0 5 16907294 NT_006576.17 16897294
ss29052 OVLP-31 A/C 4 rs29448 0 5 16907429 NT_006576.17 16897429
ss29053 OVLP-32 C/T 4 rs29449 0 5 16909131 NT_006576.17 16899131
ss29054 OVLP-33 C/T 4 rs29450 0 5 16909568 NT_006576.17 16899568
ss29055 OVLP-34 A/G 4 rs29451 0 5 16909668 NT_006576.17 16899668
ss29056 OVLP-35 A/C 4 rs29452 0 5 16910496 NT_006576.17 16900496
ss29057 OVLP-36 C/T 4 rs29453 0 5 16913239 NT_006576.17 16903239
ss29058 OVLP-37 C/T 4 rs29454 0 5 16913469 NT_006576.17 16903469
ss29059 OVLP-38 C/T 4 rs29455 0 5 16913610 NT_006576.17 16903610
ss29050 OVLP-29 A/T 4 rs29446 0 5 16916488 NT_006576.17 16906488
ss29048 OVLP-26 A/G 4 rs29444 0 5 16933129 NT_006576.17 16923129
ss29049 OVLP-27 A/G 4 rs29445 0 5 16938018 NT_006576.17 16928018
ss29047 OVLP-23 A/G 4 rs26992 1 5 66127757 NT_034772.7 16017950
ss29068 OVLP-82 A/C 4 rs27081 0 5 66142327 NT_034772.7 16032520
ss29067 OVLP-81 C/G 4 rs27046 1 5 66144136 NT_034772.7 16034329
ss29066 OVLP-80 C/T 4 rs27080 1 5 66146443 NT_034772.7 16036636
ss29065 OVLP-78 G/T 4 rs27961 1 5 66147524 NT_034772.7 16037717
ss29064 OVLP-77 A/G 4 rs27079 1 5 66148138 NT_034772.7 16038331
ss29063 OVLP-73 C/T 4 rs27584 1 5 66149404 NT_034772.7 16039597
ss29062 OVLP-72 C/G 4 rs27078 1 5 66149503 NT_034772.7 16039696
ss29061 OVLP-71 C/T 4 rs27077 1 5 66149514 NT_034772.7 16039707
ss29060 OVLP-48 C/T 4 rs27076 0 5 66154368 NT_034772.7 16044561
ss29046 OVLP-10 C/T 4 rs27655 1 5 66173635 NT_034772.7 16063828
ss29045 OVLP-9 C/T 4 rs29443 1 5 66209099 NT_034772.7 16099292
ss29044 OVLP-8 C/T 4 rs29442 1 5 66212850 NT_034772.7 16103043
ss29043 OVLP-7 A/C 4 rs29441 1 5 66213288 NT_034772.7 16103481
ss29042 OVLP-6 A/G 4 rs29440 1 5 66213334 NT_034772.7 16103527
ss29041 OVLP-5 C/G 4 rs29439 0 5 66231818 NT_034772.7 16122011
ss29040 OVLP-3 A/G 4 rs29438 0 5 66250672 NT_034772.7 16140865
ss29039 OVLP-2 G/T 4 rs29437 0 5 66253487 NT_034772.7 16143680
30 of 15134 subsnp's starting at ss29051. ss# starting at ss

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