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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-1-98
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:not supplied
Batch Total SubSNP(ss) Count:308
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001SUCCESS_RATE:98


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss44179 OVLP-1538 G/T 4 rs39567 1 16 8306081 NT_010393.17 8296081
ss44180 OVLP-1540 A/G 4 rs39568 1 16 8310836 NT_010393.17 8300836
ss44181 OVLP-1577 C/G 4 rs39569 1 16 8336074 NT_010393.17 8326074
ss44182 OVLP-1583 A/C 4 rs39570 1 16 8338931 NT_010393.17 8328931
ss44183 OVLP-1602 A/C 4 rs39571 1 16 8346549 NT_010393.17 8336549
ss44184 OVLP-1622 C/T 4 rs39572 1 16 8349923 NT_010393.17 8339923
ss44185 OVLP-1637 A/T 4 rs39573 1 16 8351349 NT_010393.17 8341349
ss44186 OVLP-1639 C/G 4 rs39574 1 16 8351788 NT_010393.17 8341788
ss44187 OVLP-1648 C/G 4 rs39575 1 16 8353337 NT_010393.17 8343337
ss44188 OVLP-1650 C/G 4 rs39576 1 16 8353467 NT_010393.17 8343467
ss44190 OVLP-7073 C/T 4 rs39578 0 19 21203324 NT_011295.12 21143324
ss44195 OVLP-8798 A/G 4 rs39583 0 5 56529108 NT_034772.7 6419301
ss44174 OVLP-25 A/G 4 rs39566 0 5 66124871 NT_034772.7 16015064
ss44175 OVLP-74 A/T 4 rs27338 0 5 66149232 NT_034772.7 16039425
ss44176 OVLP-158 A/T 4 rs27338 0 5 66149232 NT_034772.7 16039425
ss44173 OVLP-4 A/G 4 rs39565 0 5 66233684 NT_034772.7 16123877
ss44201 OVLP-11288 A/G 4 rs27434 0 5 96793809 NT_034772.7 46684002
ss44191 OVLP-7379 A/G 4 rs39579 1 5 98646583 NT_034772.7 48536776
ss44178 OVLP-983 C/T 4 rs27355 1 5 107466269 NT_034772.7 57356462
ss44200 OVLP-11180 A/G 4 rs27342 0 5 112129735 NT_034772.7 62019928
ss44196 OVLP-9859 C/G 4 rs27340 0 5 123815512 NT_034772.7 73705705
ss44177 OVLP-184 A/G 4 rs27339 0 5 124413291 NT_034772.7 74303484
ss44202 OVLP-11491 C/T 4 rs27418 0 5 129656199 NT_034772.7 79546392
ss44199 OVLP-10958 A/G 4 rs39585 0 5 134827377 NT_034772.7 84717570
ss44192 OVLP-7806 A/G 4 rs39580 0 5 152088938 NT_029289.12 12635279
ss44198 OVLP-10953 C/G 4 rs39584 0 5 156223345 NT_023133.14 462021
ss44197 OVLP-9900 A/G 4 rs27341 1 5 157252566 NT_023133.14 1491242
ss44193 OVLP-8115 A/G 4 rs39581 0 7 40913645 NT_007819.18 40903645
ss44194 OVLP-8116 C/T 4 rs39582 0 7 40913720 NT_007819.18 40903720
ss44189 OVLP-7048 C/T 4 rs39577 0 7 41808080 NT_007819.18 41798080
30 of 308 subsnp's starting at ss44179. ss# starting at ss

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