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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-1-95
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:not supplied
Batch Total SubSNP(ss) Count:99
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001SUCCESS_RATE:95


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss45556 OVLP-1560 C/G 4 rs40386 1 16 8329166 NT_010393.17 8319166
ss45557 OVLP-1590 A/G 4 rs40387 1 16 8343027 NT_010393.17 8333027
ss45558 OVLP-1592 C/G 4 rs40388 1 16 8343360 NT_010393.17 8333360
ss45559 OVLP-1628 A/T 4 rs40389 1 16 8350389 NT_010393.17 8340389
ss45560 OVLP-1668 A/T 4 rs40390 1 16 8359893 NT_010393.17 8349893
ss45571 OVLP-17833 A/G 4 rs40398 1 16 8885189 NT_010393.17 8875189
ss45564 OVLP-10106 A/G 4 rs40393 1 16 14318679 NT_010393.17 14308679
ss45566 OVLP-11867 A/C 4 rs27662 0 5 4952450 NT_006576.17 4942450
ss45580 OVLP-25312 A/T 4 rs40405 1 5 11189497 NT_006576.17 11179497
ss45578 OVLP-24297 C/T 4 rs40403 0 5 11299689 NT_006576.17 11289689
ss45584 OVLP-26799 A/G 4 rs40406 0 5 13201400 NT_006576.17 13191400
ss45563 OVLP-9996 C/G 4 rs40392 0 5 13715999 NT_006576.17 13705999
ss45581 OVLP-25442 C/G 4 rs27666 0 5 14181940 NT_006576.17 14171940
ss45582 OVLP-25537 C/T 4 rs27665 1 5 14187910 NT_006576.17 14177910
ss45583 OVLP-26167 C/G 4 rs27922 1 5 14448784 NT_006576.17 14438784
ss45577 OVLP-23307 C/T 4 rs40402 0 5 14818257 NT_006576.17 14808257
ss45567 OVLP-12503 A/T 4 rs40395 1 5 15029722 NT_006576.17 15019722
ss45562 OVLP-8671 C/T 4 rs40391 0 5 52750254 NT_034772.7 2640447
ss45572 OVLP-18728 A/C 4 rs27664 0 5 54187572 NT_034772.7 4077765
ss45579 OVLP-24539 C/T 4 rs40404 0 5 62563618 NT_034772.7 12453811
ss45575 OVLP-19356 A/G 4 rs27765 1 5 96767885 NT_034772.7 46658078
ss45561 OVLP-2063 C/T 4 rs27661 1 5 107451544 NT_034772.7 57341737
ss45565 OVLP-11780 A/G 4 rs40394 0 5 112116680 NT_034772.7 62006873
ss45573 OVLP-18821 C/G 4 rs40399 0 5 127522430 NT_034772.7 77412623
ss45569 OVLP-13663 C/G 4 rs40396 1 5 131372351 NT_034772.7 81262544
ss45568 OVLP-13615 A/C 4 rs27663 1 5 131405745 NT_034772.7 81295938
ss45574 OVLP-19296 A/G 4 rs40400 0 5 131495672 NT_034772.7 81385865
ss45576 OVLP-21186 C/T 4 rs40401 0 5 132060785 NT_034772.7 81950978
ss45570 OVLP-13717 C/T 4 rs40397 1 5 136009185 NT_034772.7 85899378
ss45555 OVLP-166 C/T 4 rs40385 0 7 111988114 NT_007933.16 49481335
30 of 99 subsnp's starting at ss45556. ss# starting at ss

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