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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-1-85
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:not supplied
Batch Total SubSNP(ss) Count:12
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001SUCCESS_RATE:85


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss48184 OVLP-36034 C/T 4 rs42487 0 16 6337954 NT_010393.17 6327954
ss48191 OVLP-120304 A/G 4 rs42492 0 16 6497540 NT_010393.17 6487540
ss48190 OVLP-120290 A/G 4 rs42491 0 16 6516143 NT_010393.17 6506143
ss48180 OVLP-10991 A/G 4 rs42483 0 16 52430671 NT_010498.16 6049989
ss48182 OVLP-12575 C/T 4 rs42485 1 5 14260983 NT_006576.17 14250983
ss48183 OVLP-21567 A/G 4 rs42486 0 5 16844954 NT_006576.17 16834954
ss48185 OVLP-36340 A/G 4 rs27968 0 5 66774516 NT_034772.7 16664709
ss48186 OVLP-43931 A/G 4 rs27969 0 5 96757737 NT_034772.7 46647930
ss48181 OVLP-11042 C/T 4 rs42484 0 5 112121778 NT_034772.7 62011971
ss48188 OVLP-118451 C/G 4 rs42489 0 7 82325064 NT_007933.16 19818285
ss48187 OVLP-116403 C/T 4 rs42488 0 7 118332307 NT_007933.16 55825528
ss48189 OVLP-119927 A/G 4 rs42490 0 8 89766285 NT_008046.17 4052063
12 of 12 subsnp's starting at ss48184.This is the last page.

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