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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-1-82
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:not supplied
Batch Total SubSNP(ss) Count:12
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001SUCCESS_RATE:82


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss49047 OVLP-69921 C/T 4 rs43146 0 12 95573626 NT_029419.13 58338374
ss49046 OVLP-68236 A/G 4 rs43145 1 16 9344899 NT_010393.17 9334899
ss49053 OVLP-104318 G/T 4 rs43152 0 16 11204650 NT_010393.17 11194650
ss49043 OVLP-11324 C/T 4 rs43143 0 16 52488537 NT_010498.16 6107855
ss49042 OVLP-1135 C/T 4 rs28181 0 5 9244414 NT_006576.17 9234414
ss49044 OVLP-18168 C/T 4 rs43144 1 5 25733708 NT_006576.17 25723708
ss49051 OVLP-99329 A/C 4 rs43150 1 5 82999919 NT_034772.7 32890112
ss49050 OVLP-94672 A/G 4 rs43149 1 5 90530376 NT_034772.7 40420569
ss49045 OVLP-27546 C/T 4 rs28092 1 5 102814091 NT_034772.7 52704284
ss49049 OVLP-90085 A/C 4 rs43148 0 5 127351995 NT_034772.7 77242188
ss49048 OVLP-86344 C/G 4 rs43147 0 5 149037540 NT_029289.12 9583881
ss49052 OVLP-99349 A/T 4 N.D. N.D.
12 of 12 subsnp's starting at ss49047.This is the last page.

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