NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000621-5
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:2399
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss228455 OVLP-000621-5471 A/G 4 rs149123 1 5 14222231 NT_006576.17 14212231
ss228442 OVLP-000621-2436 A/G 4 rs32757 0 5 35409922 NT_006576.17 35399922
ss228461 OVLP-000621-6650 A/G 4 rs159140 0 5 36925903 NT_006576.17 36915903
ss228439 OVLP-000621-1919 A/T 4 rs151912 1 5 58311315 NT_034772.7 8201508
ss228450 OVLP-000621-5193 C/T 4 rs158152 1 5 58440021 NT_034772.7 8330214
ss228458 OVLP-000621-6194 A/T 4 rs171530 1 5 65491877 NT_034772.7 15382070
ss228459 OVLP-000621-6196 A/G 4 rs171531 1 5 65493016 NT_034772.7 15383209
ss228441 OVLP-000621-2277 A/G 4 rs160045 1 5 88845125 NT_034772.7 38735318
ss228448 OVLP-000621-4005 C/G 4 rs151903 0 5 96731731 NT_034772.7 46621924
ss228457 OVLP-000621-5660 C/T 4 rs149429 0 5 96733676 NT_034772.7 46623869
ss228456 OVLP-000621-5614 A/C 4 rs149481 1 5 96778642 NT_034772.7 46668835
ss228460 OVLP-000621-6335 A/G 4 rs30376 1 5 96784555 NT_034772.7 46674748
ss228463 OVLP-000621-7557 C/T 4 rs26654 0 5 96804664 NT_034772.7 46694857
ss228447 OVLP-000621-3873 A/T 4 rs27778 0 5 96813534 NT_034772.7 46703727
ss228462 OVLP-000621-7101 A/G 4 rs42443 0 5 96820521 NT_034772.7 46710714
ss228464 OVLP-000621-7601 A/G 4 rs42443 0 5 96820521 NT_034772.7 46710714
ss228452 OVLP-000621-5346 C/T 4 rs149126 1 5 98590394 NT_034772.7 48480587
ss228453 OVLP-000621-5349 A/C 4 rs171528 0 5 98592591 NT_034772.7 48482784
ss228454 OVLP-000621-5350 C/T 4 rs171529 0 5 98593098 NT_034772.7 48483291
ss228444 OVLP-000621-3035 A/C 4 rs171525 0 5 110774937 NT_034772.7 60665130
ss228445 OVLP-000621-3037 C/T 4 rs171526 0 5 110775498 NT_034772.7 60665691
ss228437 OVLP-000621-874 A/G 4 rs171521 1 5 111158415 NT_034772.7 61048608
ss228438 OVLP-000621-886 C/T 4 rs171522 0 5 111166494 NT_034772.7 61056687
ss228436 OVLP-000621-360 A/G 4 rs151273 0 5 127506111 NT_034772.7 77396304
ss228449 OVLP-000621-4403 A/G 4 rs151884 0 5 127835201 NT_034772.7 77725394
ss228451 OVLP-000621-5314 A/G 4 rs171527 1 5 128327014 NT_034772.7 78217207
ss228435 OVLP-000621-120 A/C 4 rs171520 0 5 129897735 NT_034772.7 79787928
ss228440 OVLP-000621-2176 A/G 4 rs171523 0 5 131509253 NT_034772.7 81399446
ss228446 OVLP-000621-3688 A/C 4 rs152401 1 5 134142668 NT_034772.7 84032861
ss228443 OVLP-000621-2975 A/T 4 rs171524 0 5 155877651 NT_023133.14 116327
30 of 2399 subsnp's starting at ss228455. ss# starting at ss

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement