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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000621-9
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:1488
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss243569 OVLP-000621-2802 C/T 4 rs149428 1 16 58634662 NT_010498.16 12253980
ss243571 OVLP-000621-3422 C/T 4 rs149428 1 16 58634662 NT_010498.16 12253980
ss243576 OVLP-000621-4081 A/C 4 rs153607 0 5 11194728 NT_006576.17 11184728
ss243577 OVLP-000621-4729 C/G 4 rs157503 1 5 32146504 NT_006576.17 32136504
ss243567 OVLP-000621-2411 C/T 4 rs183624 0 5 35360456 NT_006576.17 35350456
ss243566 OVLP-000621-1049 A/G 4 rs183623 0 5 51649737 NT_034772.7 1539930
ss243563 OVLP-000621-425 G/T 4 rs181281 0 5 52736230 NT_034772.7 2626423
ss243575 OVLP-000621-3905 C/T 4 rs30365 0 5 56532958 NT_034772.7 6423151
ss243578 OVLP-000621-5918 C/T 4 rs154229 1 5 83024263 NT_034772.7 32914456
ss243583 OVLP-000621-6423 C/T 4 rs149429 0 5 96733676 NT_034772.7 46623869
ss243582 OVLP-000621-6380 A/G 4 rs27640 1 5 96792202 NT_034772.7 46682395
ss243591 OVLP-000621-7511 A/G 4 rs27640 1 5 96792202 NT_034772.7 46682395
ss243587 OVLP-000621-7032 C/T 4 rs27434 1 5 96793809 NT_034772.7 46684002
ss243572 OVLP-000621-3826 C/T 4 rs26491 1 5 96798410 NT_034772.7 46688603
ss243586 OVLP-000621-7021 C/T 4 rs26491 1 5 96798410 NT_034772.7 46688603
ss243590 OVLP-000621-7499 C/T 4 rs26491 1 5 96798410 NT_034772.7 46688603
ss243574 OVLP-000621-3876 A/G 4 rs30334 0 5 96801793 NT_034772.7 46691986
ss243584 OVLP-000621-6424 A/G 4 rs30334 0 5 96801793 NT_034772.7 46691986
ss243588 OVLP-000621-7047 A/G 4 rs30334 0 5 96801793 NT_034772.7 46691986
ss243585 OVLP-000621-6692 A/G 4 rs34758 0 5 96816968 NT_034772.7 46707161
ss243573 OVLP-000621-3861 C/T 4 rs149431 1 5 96821838 NT_034772.7 46712031
ss243589 OVLP-000621-7108 C/T 4 rs149431 1 5 96821838 NT_034772.7 46712031
ss243579 OVLP-000621-5987 C/G 4 rs183628 0 5 98643787 NT_034772.7 48533980
ss243562 OVLP-000621-76 A/C 4 rs183619 0 5 110789169 NT_034772.7 60679362
ss243564 OVLP-000621-977 A/G 4 rs183621 1 5 144371018 NT_029289.12 4917359
ss243565 OVLP-000621-978 A/C 4 rs183622 1 5 144371100 NT_029289.12 4917441
ss243581 OVLP-000621-6265 C/G 4 rs183630 1 5 155302587 NT_029289.12 15848928
ss243580 OVLP-000621-6245 C/T 4 rs183629 1 5 155336864 NT_029289.12 15883205
ss243570 OVLP-000621-2951 C/T 4 rs183626 0 5 155893090 NT_023133.14 131766
ss243568 OVLP-000621-2738 A/G 4 rs183625 0 5 168479984 NT_023133.14 12718660
30 of 1488 subsnp's starting at ss243569. ss# starting at ss

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