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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000621-13
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:2651
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss247953 OVLP-000621-726 A/G 4 rs1950 0 12 30975671 NT_009714.18 23891021
ss247967 OVLP-000621-2625 A/G 4 rs187375 1 16 84216596 NT_010498.16 37835914
ss247965 OVLP-000621-2495 A/G 4 rs187373 0 16 84231895 NT_010498.16 37851213
ss247966 OVLP-000621-2592 C/G 4 rs187374 1 16 84282188 NT_010498.16 37901506
ss247964 OVLP-000621-2475 A/G 4 rs187372 0 16 84318222 NT_010498.16 37937540
ss247981 OVLP-000621-5582 A/G 4 rs187386 0 5 14199703 NT_006576.17 14189703
ss247959 OVLP-000621-1442 A/G 4 rs187369 0 5 51627475 NT_034772.7 1517668
ss247977 OVLP-000621-4803 A/T 4 rs187382 1 5 58321003 NT_034772.7 8211196
ss247961 OVLP-000621-1950 C/T 4 rs27209 1 5 58330155 NT_034772.7 8220348
ss247958 OVLP-000621-1430 A/T 4 rs187368 0 5 59384216 NT_034772.7 9274409
ss247971 OVLP-000621-3452 A/C 4 rs187379 0 5 72625300 NT_034772.7 22515493
ss247978 OVLP-000621-4977 C/T 4 rs184967 1 5 80854162 NT_034772.7 30744355
ss247963 OVLP-000621-2308 A/G 4 rs187371 1 5 88818721 NT_034772.7 38708914
ss247962 OVLP-000621-2288 A/G 4 rs160042 0 5 88847709 NT_034772.7 38737902
ss247974 OVLP-000621-4030 C/G 4 rs26501 0 5 96765060 NT_034772.7 46655253
ss247975 OVLP-000621-4039 A/G 4 rs25863 0 5 96770222 NT_034772.7 46660415
ss247973 OVLP-000621-3865 C/G 4 rs149544 0 5 96822151 NT_034772.7 46712344
ss247979 OVLP-000621-5374 A/G 4 rs187384 1 5 98567454 NT_034772.7 48457647
ss247980 OVLP-000621-5399 A/G 4 rs187385 1 5 98579108 NT_034772.7 48469301
ss247952 OVLP-000621-21 C/T 4 rs187362 0 5 110728088 NT_034772.7 60618281
ss247968 OVLP-000621-2848 C/T 4 rs187362 0 5 110728088 NT_034772.7 60618281
ss247970 OVLP-000621-3050 G/T 4 rs187378 0 5 110795700 NT_034772.7 60685893
ss247976 OVLP-000621-4545 G/T 4 rs187381 0 5 127906395 NT_034772.7 77796588
ss247972 OVLP-000621-3681 C/T 4 rs187380 0 5 134076180 NT_034772.7 83966373
ss247969 OVLP-000621-2903 C/T 4 rs187377 0 5 134098385 NT_034772.7 83988578
ss247957 OVLP-000621-956 C/T 4 rs187367 0 5 144351599 NT_029289.12 4897940
ss247956 OVLP-000621-954 A/C 4 rs187366 0 5 144352591 NT_029289.12 4898932
ss247955 OVLP-000621-953 C/T 4 rs187365 0 5 144353209 NT_029289.12 4899550
ss247954 OVLP-000621-952 A/G 4 rs187364 0 5 144353216 NT_029289.12 4899557
ss247960 OVLP-000621-1463 C/T 4 rs187370 0 Y 13647567 NT_011875.13 2004665
30 of 2651 subsnp's starting at ss247953. ss# starting at ss

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