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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000621-15
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:500
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss250792 OVLP-000621-68302 C/T 4 rs189853 0 16 52390006 NT_010498.16 6009324
ss250791 OVLP-000621-68288 A/G 4 rs189852 0 16 52467802 NT_010498.16 6087120
ss250790 OVLP-000621-68264 A/C 4 rs189851 0 16 52482621 NT_010498.16 6101939
ss250777 OVLP-000621-47037 C/G 4 rs189840 0 16 58000219 NT_010498.16 11619537
ss250773 OVLP-000621-32586 C/T 4 rs189836 1 19 8814879 NT_011295.12 8754879
ss250772 OVLP-000621-27852 A/G 4 rs189835 1 5 4977384 NT_006576.17 4967384
ss250776 OVLP-000621-46790 A/G 4 rs189839 1 5 9584484 NT_006576.17 9574484
ss250775 OVLP-000621-46305 G/T 4 rs189838 1 5 9718297 NT_006576.17 9708297
ss250771 OVLP-000621-24869 C/T 4 rs187087 1 5 14173249 NT_006576.17 14163249
ss250779 OVLP-000621-48614 A/T 4 rs149548 1 5 50928283 NT_034772.7 818476
ss250787 OVLP-000621-64486 A/G 4 rs189848 0 5 53662727 NT_034772.7 3552920
ss250788 OVLP-000621-64495 A/G 4 rs189849 1 5 53668235 NT_034772.7 3558428
ss250785 OVLP-000621-62952 G/T 4 rs41151 0 5 54269224 NT_034772.7 4159417
ss250789 OVLP-000621-64771 A/T 4 rs185320 0 5 59239508 NT_034772.7 9129701
ss250778 OVLP-000621-47891 A/G 4 rs187574 0 5 61750107 NT_034772.7 11640300
ss250784 OVLP-000621-60800 C/G 4 rs189846 0 5 63502429 NT_034772.7 13392622
ss250764 OVLP-000621-5006 A/G 4 rs189829 0 5 80841215 NT_034772.7 30731408
ss250769 OVLP-000621-23261 A/T 4 rs189832 1 5 94962491 NT_034772.7 44852684
ss250765 OVLP-000621-6395 A/G 4 rs26489 1 5 96797724 NT_034772.7 46687917
ss250774 OVLP-000621-39476 A/G 4 rs189837 1 5 98557505 NT_034772.7 48447698
ss250767 OVLP-000621-14855 A/G 4 rs189830 0 5 127477758 NT_034772.7 77367951
ss250770 OVLP-000621-23903 A/G 4 rs189833 0 5 127681179 NT_034772.7 77571372
ss250766 OVLP-000621-14153 A/G 4 rs149584 1 5 133526681 NT_034772.7 83416874
ss250763 OVLP-000621-3694 A/G 4 rs184958 0 5 134123503 NT_034772.7 84013696
ss250786 OVLP-000621-64151 A/C 4 rs189847 1 5 138607685 NT_034772.7 88497878
ss250780 OVLP-000621-49724 C/G 4 rs189843 0 5 165173145 NT_023133.14 9411821
ss250783 OVLP-000621-54997 A/C 4 rs189845 0 7 140176360 NT_007933.16 77669581
ss250768 OVLP-000621-16253 A/T 4 N.D. N.D.
ss250781 OVLP-000621-53460 A/G 4 N.D. N.D.
ss250782 OVLP-000621-53603 A/T 4 N.D. N.D.
30 of 500 subsnp's starting at ss250792. ss# starting at ss

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