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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000621-3
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:59431
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss254742 OVLP-000621-1561 A/C 4 rs193449 0 14 70848823 NT_026437.13 52625300
ss254737 OVLP-000621-1025 C/T 4 rs193444 0 14 71350821 NT_026437.13 53127298
ss254736 OVLP-000621-1024 C/T 4 rs193443 0 14 71350969 NT_026437.13 53127446
ss254735 OVLP-000621-1023 C/T 4 rs193442 0 14 71353717 NT_026437.13 53130194
ss254734 OVLP-000621-1022 C/T 4 rs193441 0 14 71354109 NT_026437.13 53130586
ss254733 OVLP-000621-1001 A/G 4 rs193440 0 14 71386576 NT_026437.13 53163053
ss254739 OVLP-000621-1321 A/G 4 rs193446 0 16 84795276 NT_010498.16 38414594
ss254738 OVLP-000621-1030 C/T 4 rs193445 1 5 51617144 NT_034772.7 1507337
ss254741 OVLP-000621-1434 C/T 4 rs193445 1 5 51617144 NT_034772.7 1507337
ss254732 OVLP-000621-462 C/T 4 rs164651 0 5 52756396 NT_034772.7 2646589
ss254731 OVLP-000621-457 C/G 4 rs193439 0 5 52760375 NT_034772.7 2650568
ss254730 OVLP-000621-441 C/G 4 rs193438 0 5 52769272 NT_034772.7 2659465
ss254749 OVLP-000621-1744 G/T 4 rs157073 0 5 54154277 NT_034772.7 4044470
ss254750 OVLP-000621-1894 G/T 4 rs151874 0 5 58299526 NT_034772.7 8189719
ss254751 OVLP-000621-1922 C/T 4 rs151866 1 5 58312829 NT_034772.7 8203022
ss254752 OVLP-000621-1927 A/T 4 rs41385 1 5 58316011 NT_034772.7 8206204
ss254754 OVLP-000621-1964 A/G 4 rs41234 1 5 58321081 NT_034772.7 8211274
ss254753 OVLP-000621-1955 A/C 4 rs151869 0 5 58324697 NT_034772.7 8214890
ss254740 OVLP-000621-1415 C/T 4 rs193447 0 5 59381190 NT_034772.7 9271383
ss254728 OVLP-000621-90 C/T 4 rs193436 0 5 110769153 NT_034772.7 60659346
ss254729 OVLP-000621-122 A/C 4 rs193437 0 5 129897075 NT_034772.7 79787268
ss254757 OVLP-000621-2207 A/G 4 rs193459 0 5 129918912 NT_034772.7 79809105
ss254756 OVLP-000621-2168 C/G 4 rs193458 1 5 131480591 NT_034772.7 81370784
ss254755 OVLP-000621-2029 C/G 4 rs193457 1 5 177105216 NT_023133.14 21343892
ss254743 OVLP-000621-1581 C/T 4 rs193450 0 7 108670395 NT_007933.16 46163616
ss254744 OVLP-000621-1582 A/G 4 rs193451 0 7 108670542 NT_007933.16 46163763
ss254745 OVLP-000621-1586 C/G 4 rs193452 0 7 108671803 NT_007933.16 46165024
ss254746 OVLP-000621-1591 C/T 4 rs193453 0 7 108672657 NT_007933.16 46165878
ss254747 OVLP-000621-1592 C/T 4 rs193454 0 7 108673775 NT_007933.16 46166996
ss254748 OVLP-000621-1596 A/G 4 rs193455 0 7 108679352 NT_007933.16 46172573
30 of 59431 subsnp's starting at ss254742. ss# starting at ss

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