NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000621-1
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:143852
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss314178 OVLP-000621-60 C/T 4 rs244423 1 16 69576099 NT_010498.16 23195417
ss314177 OVLP-000621-58 C/G 4 rs244422 1 16 69583610 NT_010498.16 23202928
ss314173 OVLP-000621-48 C/T 4 rs244418 1 16 69588859 NT_010498.16 23208177
ss314169 OVLP-000621-43 C/T 4 rs244414 1 16 69612875 NT_010498.16 23232193
ss314174 OVLP-000621-51 C/T 4 rs244419 0 16 69623753 NT_010498.16 23243071
ss314175 OVLP-000621-52 G/T 4 rs244420 0 16 69624093 NT_010498.16 23243411
ss314176 OVLP-000621-53 A/G 4 rs244421 0 16 69626603 NT_010498.16 23245921
ss314172 OVLP-000621-47 A/G 4 rs244417 1 16 69629616 NT_010498.16 23248934
ss314171 OVLP-000621-45 A/G 4 rs244416 1 16 69631305 NT_010498.16 23250623
ss314170 OVLP-000621-44 C/T 4 rs244415 1 16 69632780 NT_010498.16 23252098
ss314163 OVLP-000621-27 C/T 4 rs244408 1 5 110686168 NT_034772.7 60576361
ss314164 OVLP-000621-28 C/T 4 rs244409 1 5 110687316 NT_034772.7 60577509
ss314165 OVLP-000621-29 C/G 4 rs244410 1 5 110687631 NT_034772.7 60577824
ss314159 OVLP-000621-11 C/T 4 rs151784 0 5 110720556 NT_034772.7 60610749
ss314184 OVLP-000621-85 C/T 4 rs187362 0 5 110728088 NT_034772.7 60618281
ss314167 OVLP-000621-32 C/T 4 rs244412 1 5 110741315 NT_034772.7 60631508
ss314166 OVLP-000621-31 A/G 4 rs244411 1 5 110742779 NT_034772.7 60632972
ss314168 OVLP-000621-36 C/G 4 rs244413 0 5 110750006 NT_034772.7 60640199
ss314187 OVLP-000621-91 C/T 4 rs244432 0 5 110768337 NT_034772.7 60658530
ss314186 OVLP-000621-89 C/T 4 rs244431 0 5 110769463 NT_034772.7 60659656
ss314185 OVLP-000621-88 A/G 4 rs244430 0 5 110770934 NT_034772.7 60661127
ss314179 OVLP-000621-71 C/T 4 rs244424 1 5 110788890 NT_034772.7 60679083
ss314181 OVLP-000621-74 A/G 4 rs244426 0 5 110791848 NT_034772.7 60682041
ss314180 OVLP-000621-73 A/T 4 rs244425 0 5 110792480 NT_034772.7 60682673
ss314182 OVLP-000621-78 G/T 4 rs244427 0 5 110798604 NT_034772.7 60688797
ss314160 OVLP-000621-13 G/T 4 rs244406 1 5 110800585 NT_034772.7 60690778
ss314161 OVLP-000621-17 C/T 4 rs151785 0 5 110803270 NT_034772.7 60693463
ss314162 OVLP-000621-18 A/G 4 rs244407 1 5 110803364 NT_034772.7 60693557
ss314183 OVLP-000621-82 A/G 4 rs244407 1 5 110803364 NT_034772.7 60693557
ss314188 OVLP-000621-94 A/G 4 rs244433 0 5 166943002 NT_023133.14 11181678
30 of 143852 subsnp's starting at ss314178. ss# starting at ss