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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000804-7
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:1181
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss1058772 OVLP-000804-7843 A/C 4 rs172393 0 1 33555931 NT_032977.10 32969943
ss1058771 OVLP-000804-7838 C/G 4 rs172392 0 1 33578844 NT_032977.10 32992856
ss1058783 OVLP-000804-15810 G/T 4 rs515192 0 13 33102435 NT_024524.15 14694329
ss1058784 OVLP-000804-15818 C/T 4 rs564790 1 13 33130936 NT_024524.15 14722830
ss1058759 OVLP-000804-662 A/C 4 rs182145 0 13 50479585 NT_024524.15 32071479
ss1058773 OVLP-000804-8395 C/T 4 rs182187 0 13 50485120 NT_024524.15 32077014
ss1058782 OVLP-000804-15303 C/G 4 rs149872 0 13 50486673 NT_024524.15 32078567
ss1058758 OVLP-000804-655 A/C 4 rs149340 0 13 50486908 NT_024524.15 32078802
ss1058775 OVLP-000804-8624 A/G 4 rs182609 0 13 89218307 NT_009952.15 2965328
ss1058780 OVLP-000804-12503 A/G 4 rs182609 0 13 89218307 NT_009952.15 2965328
ss1058781 OVLP-000804-12535 A/G 4 rs182608 0 13 89232186 NT_009952.15 2979207
ss1058779 OVLP-000804-12477 G/T 4 rs182607 0 13 89262915 NT_009952.15 3009936
ss1058770 OVLP-000804-6465 A/G 4 rs173202 0 19 43749436 NT_011109.17 16508562
ss1058760 OVLP-000804-1113 C/G 4 rs711546 0 3 3753282 NT_022517.19 3743282
ss1058764 OVLP-000804-3710 C/G 4 rs711546 0 3 3753282 NT_022517.19 3743282
ss1058762 OVLP-000804-1226 A/G 4 rs811272 0 3 3762871 NT_022517.19 3752871
ss1058761 OVLP-000804-1150 C/T 4 rs698201 0 3 3823156 NT_022517.19 3813156
ss1058778 OVLP-000804-12144 A/G 4 rs165574 0 3 13024067 NT_022517.19 13014067
ss1058768 OVLP-000804-5190 C/T 4 rs183090 0 3 55248909 NT_022517.19 55238909
ss1058755 OVLP-000804-29 C/T 4 rs1092087 0 3 192975492 NT_005612.17 99269918
ss1058756 OVLP-000804-529 A/G 4 rs1092087 1 3 192975492 NT_005612.17 99269918
ss1058757 OVLP-000804-614 C/T 4 rs811271 0 3 196329007 NT_005612.17 102623433
ss1058763 OVLP-000804-1977 C/T 4 rs163440 0 5 14090877 NT_006576.17 14080877
ss1058774 OVLP-000804-8565 C/T 4 rs608306 1 5 88779978 NT_034772.7 38670171
ss1058767 OVLP-000804-5010 C/T 4 rs811275 0 6 5343656 NT_007592.16 5283656
ss1058766 OVLP-000804-5002 C/T 4 rs811274 0 6 5349596 NT_007592.16 5289596
ss1058765 OVLP-000804-4971 A/T 4 rs811273 0 6 5358461 NT_007592.16 5298461
ss1058776 OVLP-000804-8803 C/G 4 rs697738 1 6 16740481 NT_007592.16 16680481
ss1058777 OVLP-000804-8818 A/C 4 rs697741 0 6 16786731 NT_007592.16 16726731
ss1058769 OVLP-000804-5320 C/T 4 rs811276 0 9 77483111 NT_008470.20 9262559
30 of 1181 subsnp's starting at ss1058772. ss# starting at ss

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