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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000804-9
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:1365
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss1060461 OVLP-000804-2510 C/G 4 rs811739 0 1 75299973 NT_032977.10 74713985
ss1060476 OVLP-000804-10667 A/G 4 rs697986 0 1 81813901 NT_032977.10 81227913
ss1060480 OVLP-000804-13620 A/G 4 rs697986 0 1 81813901 NT_032977.10 81227913
ss1060479 OVLP-000804-13517 C/T 4 rs222882 0 1 96069892 NT_032977.10 95483904
ss1060483 OVLP-000804-16994 C/T 4 rs490895 0 11 18026504 NT_009237.19 17966504
ss1060472 OVLP-000804-9047 A/G 4 rs300417 0 12 78070430 NT_029419.13 40835178
ss1060473 OVLP-000804-9048 G/T 4 rs300418 0 12 78070924 NT_029419.13 40835672
ss1060460 OVLP-000804-1841 A/G 4 rs704069 0 12 89333966 NT_029419.13 52098714
ss1060477 OVLP-000804-10958 A/G 4 rs811745 0 12 89381292 NT_029419.13 52146040
ss1060458 OVLP-000804-730 A/C 4 rs183911 0 13 50380731 NT_024524.15 31972625
ss1060457 OVLP-000804-659 C/T 4 rs182187 0 13 50485120 NT_024524.15 32077014
ss1060468 OVLP-000804-8364 A/G 4 rs183950 0 13 50511956 NT_024524.15 32103850
ss1060467 OVLP-000804-8362 C/T 4 rs183949 0 13 50513916 NT_024524.15 32105810
ss1060470 OVLP-000804-8418 A/G 4 rs183948 1 13 50526709 NT_024524.15 32118603
ss1060469 OVLP-000804-8414 A/T 4 rs183947 0 13 50530097 NT_024524.15 32121991
ss1060481 OVLP-000804-15501 A/T 4 rs164646 0 13 69457984 NT_024524.15 51049878
ss1060475 OVLP-000804-10199 C/T 4 rs184573 0 15 66039692 NT_010194.18 42762818
ss1060464 OVLP-000804-3806 C/T 4 rs811741 0 3 3681057 NT_022517.19 3671057
ss1060463 OVLP-000804-3761 A/G 4 rs811740 1 3 3724466 NT_022517.19 3714466
ss1060462 OVLP-000804-3697 C/G 4 rs711556 0 3 3742987 NT_022517.19 3732987
ss1060459 OVLP-000804-1222 A/C 4 rs811738 0 3 3762485 NT_022517.19 3752485
ss1060465 OVLP-000804-4669 C/T 4 rs183029 0 3 52175868 NT_022517.19 52165868
ss1060456 OVLP-000804-586 G/T 4 rs811737 0 3 192933477 NT_005612.17 99227903
ss1060455 OVLP-000804-516 A/G 4 rs769456 0 3 192981321 NT_005612.17 99275747
ss1060466 OVLP-000804-5468 A/G 4 rs511067 0 4 49246285 NT_006238.12 16407269
ss1060482 OVLP-000804-16529 A/G 4 rs184737 0 5 19458679 NT_006576.17 19448679
ss1060474 OVLP-000804-9430 C/T 4 rs811744 0 5 174613891 NT_023133.14 18852567
ss1060471 OVLP-000804-8798 A/G 4 rs607138 1 6 16749336 NT_007592.16 16689336
ss1060478 OVLP-000804-13208 C/G 4 rs592845 0 6 16760692 NT_007592.16 16700692
ss1060484 OVLP-000804-17824 C/T 4 rs183800 0 8 130775789 NT_008046.17 45061567
30 of 1365 subsnp's starting at ss1060461. ss# starting at ss

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