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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000804-20
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:64
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1068758 OVLP-000804-84427 C/T 4 rs814289 1 12 51860827 NT_029419.13 14625575
ss1068760 OVLP-000804-133614 A/G 4 rs814290 1 12 67289908 NT_029419.13 30054656
ss1068755 OVLP-000804-54889 A/G 4 rs711072 0 12 77510297 NT_029419.13 40275045
ss1068754 OVLP-000804-54856 G/T 4 rs695980 0 12 77607266 NT_029419.13 40372014
ss1068750 OVLP-000804-23590 C/T 4 rs814286 0 12 77686356 NT_029419.13 40451104
ss1068777 OVLP-000804-289815 A/C 4 rs814300 0 15 61044536 NT_010194.18 37767662
ss1068762 OVLP-000804-150606 A/C 4 rs193397 0 16 63298456 NT_010498.16 16917774
ss1068756 OVLP-000804-64642 A/G 4 rs193425 0 17 29111599 NT_010783.16 2175619
ss1068761 OVLP-000804-145641 C/T 4 rs557179 0 17 42888012 NT_010783.16 15952032
ss1068749 OVLP-000804-15914 A/G 4 rs192352 0 18 10962301 NT_010859.15 10952301
ss1068763 OVLP-000804-185322 C/T 4 rs193373 0 18 24110968 NT_010966.15 3199762
ss1068753 OVLP-000804-45458 A/G 4 rs192430 0 18 33102444 NT_010966.15 12191238
ss1068752 OVLP-000804-36561 A/G 4 rs193390 1 19 58037290 NT_011109.17 30796416
ss1068770 OVLP-000804-220954 C/T 4 rs814295 0 2 27520348 NT_022184.16 11374229
ss1068766 OVLP-000804-199939 G/T 4 rs187850 0 3 10160068 NT_022517.19 10150068
ss1068759 OVLP-000804-131384 C/T 4 rs184930 0 3 13319013 NT_022517.19 13309013
ss1068772 OVLP-000804-237301 A/C 4 rs814296 0 3 59881632 NT_022517.19 59871632
ss1068776 OVLP-000804-275256 A/G 4 rs193413 0 3 78916083 NT_022517.19 78906083
ss1068775 OVLP-000804-265946 C/T 4 rs193408 1 3 78963520 NT_022517.19 78953520
ss1068765 OVLP-000804-191014 C/T 4 rs193423 0 3 156728472 NT_005612.17 63022898
ss1068751 OVLP-000804-35038 C/T 4 rs193372 0 3 193576379 NT_005612.17 99870805
ss1068768 OVLP-000804-216000 A/G 4 rs193435 0 4 151894562 NT_016354.20 92973181
ss1068774 OVLP-000804-250496 C/T 4 rs186740 1 5 55254289 NT_034772.7 5144482
ss1068764 OVLP-000804-190648 C/G 4 rs192786 0 5 85375533 NT_034772.7 35265726
ss1068767 OVLP-000804-212569 A/G 4 rs193346 0 5 119427804 NT_034772.7 69317997
ss1068769 OVLP-000804-217234 A/G 4 rs1068782 0 5 124332146 NT_034772.7 74222339
ss1068771 OVLP-000804-226327 A/G 4 rs149628 0 5 124340520 NT_034772.7 74230713
ss1068748 OVLP-000804-9423 C/G 4 rs651958 0 5 174488685 NT_023133.14 18727361
ss1068773 OVLP-000804-238095 A/C 4 rs193419 0 5 179254365 NT_023133.14 23493041
ss1068757 OVLP-000804-65597 G/T 4 N.D. N.D.
30 of 64 subsnp's starting at ss1068758. ss# starting at ss

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