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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000804-102
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:2739
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1195235 OVLP-000804-6427 A/C 4 rs320061 0 1 48713356 NT_032977.10 48127368
ss1195218 OVLP-000804-2145 A/G 4 rs640866 1 1 190813772 NT_004487.20 47629185
ss1195238 OVLP-000804-7057 A/G 4 rs167333 0 10 88703799 NT_030059.14 47010278
ss1195237 OVLP-000804-7017 G/T 4 rs167332 0 10 88783255 NT_030059.14 47089734
ss1195226 OVLP-000804-4497 C/T 4 rs560169 0 18 62928096 NT_010966.15 42016890
ss1195244 OVLP-000804-9257 A/G 4 rs166539 0 19 40425810 NT_011109.17 13184936
ss1195230 OVLP-000804-4922 C/G 4 rs843779 0 19 40504140 NT_011109.17 13263266
ss1195231 OVLP-000804-4930 A/T 4 rs843780 0 19 40507334 NT_011109.17 13266460
ss1195228 OVLP-000804-4878 C/T 4 rs843777 1 19 40550886 NT_011109.17 13310012
ss1195229 OVLP-000804-4906 A/G 4 rs843778 0 19 40574908 NT_011109.17 13334034
ss1195236 OVLP-000804-6878 C/T 4 rs166907 0 19 44883598 NT_011109.17 17642724
ss1195227 OVLP-000804-4548 C/G 4 rs843776 1 3 35376453 NT_022517.19 35366453
ss1195217 OVLP-000804-1646 C/T 4 rs168161 0 4 87017591 NT_016354.20 28096210
ss1195222 OVLP-000804-3294 A/G 4 rs168204 0 4 87103757 NT_016354.20 28182376
ss1195221 OVLP-000804-3257 C/T 4 rs16930 0 4 87122793 NT_016354.20 28201412
ss1195216 OVLP-000804-1383 A/G 4 rs160491 1 5 56227742 NT_034772.7 6117935
ss1195215 OVLP-000804-1382 A/G 4 rs160492 1 5 56227762 NT_034772.7 6117955
ss1195223 OVLP-000804-3410 A/G 4 rs42443 0 5 96820521 NT_034772.7 46710714
ss1195240 OVLP-000804-7313 A/T 4 rs258132 0 5 102765152 NT_034772.7 52655345
ss1195239 OVLP-000804-7235 C/T 4 rs27857 0 5 102812788 NT_034772.7 52702981
ss1195234 OVLP-000804-6182 C/T 4 rs152111 0 5 169850119 NT_023133.14 14088795
ss1195233 OVLP-000804-6141 C/T 4 rs166355 0 5 169903232 NT_023133.14 14141908
ss1195232 OVLP-000804-6140 C/T 4 rs166354 0 5 169903695 NT_023133.14 14142371
ss1195224 OVLP-000804-3862 A/G 4 rs166324 1 5 169931670 NT_023133.14 14170346
ss1195225 OVLP-000804-3881 G/T 4 rs67777 1 5 169937813 NT_023133.14 14176489
ss1195241 OVLP-000804-7380 A/C 4 rs155510 0 6 104357987 NT_025741.16 44128053
ss1195242 OVLP-000804-8217 C/G 4 rs166854 0 7 132106126 NT_007933.16 69599347
ss1195243 OVLP-000804-8253 A/G 4 rs166853 0 7 132122137 NT_007933.16 69615358
ss1195220 OVLP-000804-2261 A/T 4 rs580393 0 8 9967539 NT_077531.5 2300412
ss1195219 OVLP-000804-2260 A/G 4 rs607041 0 8 10012536 NT_077531.5 2345409
30 of 2739 subsnp's starting at ss1195235. ss# starting at ss

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