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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000804-108
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:659
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1279016 OVLP-000804-31148 C/T 4 rs183486 0 1 185455860 NT_004487.20 42271273
ss1279017 OVLP-000804-32464 C/T 4 rs594907 0 12 117670743 NT_029419.13 80435491
ss1279018 OVLP-000804-33513 G/T 4 rs183611 0 14 89553199 NT_026437.13 71329676
ss1279019 OVLP-000804-33572 C/T 4 rs44812 0 14 89580555 NT_026437.13 71357032
ss1278993 OVLP-000804-3003 C/T 4 rs864017 0 15 83371618 NT_010194.18 60094744
ss1279013 OVLP-000804-26287 G/T 4 rs183359 0 18 62657356 NT_010966.15 41746150
ss1279002 OVLP-000804-14334 A/C 4 rs183273 0 2 74668930 NT_022184.16 58522811
ss1279001 OVLP-000804-14299 A/G 4 rs150137 0 2 74719614 NT_022184.16 58573495
ss1279015 OVLP-000804-30816 C/T 4 rs864019 0 20 12765180 NT_011387.9 12705180
ss1278992 OVLP-000804-1523 A/T 4 rs183340 0 20 55457117 NT_011362.11 24405609
ss1279014 OVLP-000804-28304 C/T 4 rs183197 0 3 37472968 NT_022517.19 37462968
ss1278994 OVLP-000804-6233 A/C 4 rs173667 0 5 13152486 NT_006576.17 13142486
ss1278999 OVLP-000804-9028 A/T 4 rs32852 0 5 13161076 NT_006576.17 13151076
ss1278998 OVLP-000804-8997 A/T 4 rs28012 1 5 13180408 NT_006576.17 13170408
ss1278997 OVLP-000804-8992 A/G 4 rs28013 1 5 13186447 NT_006576.17 13176447
ss1279007 OVLP-000804-23250 C/T 4 rs27654 0 5 96757518 NT_034772.7 46647711
ss1279010 OVLP-000804-23311 A/G 4 rs149173 0 5 96778789 NT_034772.7 46668982
ss1279021 OVLP-000804-35251 A/G 4 rs173642 1 5 96787287 NT_034772.7 46677480
ss1279009 OVLP-000804-23295 C/T 4 rs149189 1 5 96802101 NT_034772.7 46692294
ss1279008 OVLP-000804-23284 A/G 4 rs151949 0 5 96808142 NT_034772.7 46698335
ss1279020 OVLP-000804-35231 A/G 4 rs151949 0 5 96808142 NT_034772.7 46698335
ss1279005 OVLP-000804-19288 A/G 4 rs468130 0 5 96820326 NT_034772.7 46710519
ss1278995 OVLP-000804-7278 C/T 4 rs174015 0 5 102796263 NT_034772.7 52686456
ss1279004 OVLP-000804-14463 A/G 4 rs185240 0 5 154282997 NT_029289.12 14829338
ss1279012 OVLP-000804-25629 A/C 4 rs183189 0 5 169630810 NT_023133.14 13869486
ss1279011 OVLP-000804-25628 A/G 4 rs183190 0 5 169630821 NT_023133.14 13869497
ss1278996 OVLP-000804-8174 G/T 4 rs663417 0 6 102504803 NT_025741.16 42274869
ss1279006 OVLP-000804-20268 C/T 4 rs183473 0 6 133919265 NT_025741.16 73689331
ss1279003 OVLP-000804-14387 C/G 4 rs183318 0 X 2960123 NT_167197.2 827129
ss1279000 OVLP-000804-12009 C/G 4 rs183444 0 X 127753224 NT_011786.17 11157658
30 of 659 subsnp's starting at ss1279016. ss# starting at ss

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