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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000804-111
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:2057
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1281011 OVLP-000804-6375 C/T 4 rs186477 0 1 48608658 NT_032977.10 48022670
ss1281012 OVLP-000804-6422 C/T 4 rs186478 0 1 48711478 NT_032977.10 48125490
ss1281015 OVLP-000804-7044 G/T 4 rs186226 0 10 88710107 NT_030059.14 47016586
ss1281019 OVLP-000804-9612 A/T 4 rs436861 1 10 88729708 NT_030059.14 47036187
ss1281021 OVLP-000804-10505 C/T 4 rs304317 0 12 34061411 NT_009714.18 26976761
ss1281025 OVLP-000804-12443 C/T 4 rs486900 0 12 72441693 NT_029419.13 35206441
ss1281009 OVLP-000804-5530 A/C 4 rs186250 0 15 83398166 NT_010194.18 60121292
ss1281003 OVLP-000804-2676 C/G 4 rs186249 0 16 85937290 NT_010498.16 39556608
ss1281018 OVLP-000804-9264 A/G 4 rs185593 0 19 40446594 NT_011109.17 13205720
ss1281007 OVLP-000804-4956 C/T 4 rs864602 0 19 40498846 NT_011109.17 13257972
ss1281006 OVLP-000804-4848 C/G 4 rs864601 1 19 40531448 NT_011109.17 13290574
ss1280998 OVLP-000804-1524 C/T 4 rs150527 0 20 55457089 NT_011362.11 24405581
ss1281008 OVLP-000804-5090 C/T 4 rs864603 0 21 32648603 NT_011512.12 19682795
ss1281024 OVLP-000804-11621 C/T 4 rs475894 0 3 153185091 NT_005612.17 59479517
ss1280999 OVLP-000804-1637 C/T 4 rs186873 0 4 87022470 NT_016354.20 28101089
ss1281014 OVLP-000804-6958 C/G 4 rs1103930 0 5 10467354 NT_006576.17 10457354
ss1280996 OVLP-000804-1387 G/T 4 rs666058 0 5 56172430 NT_034772.7 6062623
ss1281016 OVLP-000804-7281 C/T 4 rs185418 0 5 102799545 NT_034772.7 52689738
ss1280997 OVLP-000804-1430 C/T 4 rs185286 0 5 169918706 NT_023133.14 14157382
ss1281010 OVLP-000804-6199 C/T 4 rs185286 0 5 169918706 NT_023133.14 14157382
ss1281020 OVLP-000804-9808 C/T 4 rs186915 1 6 79973819 NT_025741.16 19743885
ss1281022 OVLP-000804-10755 G/T 4 rs185641 0 6 104366395 NT_025741.16 44136461
ss1281023 OVLP-000804-10810 C/G 4 rs185642 1 6 104430290 NT_025741.16 44200356
ss1281005 OVLP-000804-3217 G/T 4 rs864600 0 7 72048419 NT_007933.16 9541640
ss1281001 OVLP-000804-2220 A/G 4 rs576405 0 8 9986874 NT_077531.5 2319747
ss1281000 OVLP-000804-2200 G/T 4 rs628706 0 8 9997767 NT_077531.5 2330640
ss1281002 OVLP-000804-2246 A/G 4 rs641332 0 8 10030248 NT_077531.5 2363121
ss1281004 OVLP-000804-2936 C/T 4 rs864599 0 8 10073881 NT_077531.5 2406754
ss1281013 OVLP-000804-6953 C/T 4 N.D. N.D.
ss1281017 OVLP-000804-8835 C/T 4 N.D. N.D.
30 of 2057 subsnp's starting at ss1281011. ss# starting at ss

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