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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000804-114
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:103
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1285129 OVLP-000804-170085 A/G 4 rs696606 1 1 16502145 NT_032977.10 15916157
ss1285117 OVLP-000804-97304 A/G 4 rs189724 0 1 112031963 NT_032977.10 111445975
ss1285110 OVLP-000804-9624 C/T 4 rs170004 0 10 88704200 NT_030059.14 47010679
ss1285127 OVLP-000804-162581 C/T 4 rs865825 0 11 38170541 NT_009237.19 38110541
ss1285138 OVLP-000804-228881 A/G 4 rs189810 0 13 80241935 NT_024524.15 61833829
ss1285111 OVLP-000804-20640 A/G 4 rs479380 0 15 46569931 NT_010194.18 23293057
ss1285131 OVLP-000804-186620 A/G 4 rs247618 0 16 56956891 NT_010498.16 10576209
ss1285124 OVLP-000804-142443 A/C 4 rs711751 1 16 56959997 NT_010498.16 10579315
ss1285128 OVLP-000804-164435 A/G 4 rs1104219 0 16 68468263 NT_010498.16 22087581
ss1285121 OVLP-000804-127270 A/G 4 rs189728 1 17 49933129 NT_010783.16 22997149
ss1285109 OVLP-000804-4902 C/T 4 rs865818 1 19 40481605 NT_011109.17 13240731
ss1285120 OVLP-000804-117976 A/C 4 rs189722 0 2 175250892 NT_005403.18 80754877
ss1285119 OVLP-000804-117721 A/G 4 rs865822 0 3 89585965 NT_022517.19 89575965
ss1285133 OVLP-000804-188108 A/G 4 rs189717 0 3 186808388 NT_005612.17 93102814
ss1285134 OVLP-000804-195951 C/T 4 rs865827 0 3 196973828 NT_005612.17 103268254
ss1285126 OVLP-000804-150701 G/T 4 rs189818 0 4 67366709 NT_016354.20 8445328
ss1285136 OVLP-000804-200908 A/C 4 rs189787 0 4 69627970 NT_016354.20 10706589
ss1285113 OVLP-000804-31297 A/C 4 rs189771 1 4 126668916 NT_016354.20 67747535
ss1285114 OVLP-000804-38020 C/G 4 rs187440 0 5 4900446 NT_006576.17 4890446
ss1285132 OVLP-000804-187211 A/G 4 rs189696 0 5 5504228 NT_006576.17 5494228
ss1285112 OVLP-000804-26821 A/G 4 rs186151 0 5 56177699 NT_034772.7 6067892
ss1285118 OVLP-000804-98873 A/T 4 rs172199 0 5 73947612 NT_034772.7 23837805
ss1285122 OVLP-000804-128004 A/T 4 rs189751 0 5 74220970 NT_034772.7 24111163
ss1285125 OVLP-000804-149216 C/T 4 rs186086 0 5 74394912 NT_034772.7 24285105
ss1285123 OVLP-000804-140794 G/T 4 rs152599 0 5 107443604 NT_034772.7 57333797
ss1285115 OVLP-000804-41951 A/G 4 rs189744 0 5 153939216 NT_029289.12 14485557
ss1285135 OVLP-000804-200702 A/G 4 rs865828 0 5 155330677 NT_029289.12 15877018
ss1285137 OVLP-000804-212433 C/T 4 rs189792 0 8 38611348 NT_167187.2 26327003
ss1285116 OVLP-000804-65154 A/C 4 rs189742 0 9 90140994 NT_008470.20 21920442
ss1285130 OVLP-000804-184289 G/T 4 rs1104220 0 X 64731402 NT_011651.18 2268860
30 of 103 subsnp's starting at ss1285129. ss# starting at ss

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