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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000804-120
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:74
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss1288374 OVLP-000804-231683 C/G 4 rs193386 0 1 8280128 NT_032977.10 7694140
ss1288373 OVLP-000804-231204 A/C 4 rs531323 0 1 48093114 NT_032977.10 47507126
ss1288382 OVLP-000804-326962 C/T 4 rs193356 1 1 70257501 NT_032977.10 69671513
ss1288368 OVLP-000804-173314 C/T 4 rs193398 0 1 85794083 NT_032977.10 85208095
ss1288358 OVLP-000804-41699 C/T 4 rs866863 0 1 100436675 NT_032977.10 99850687
ss1288370 OVLP-000804-207870 G/T 4 rs657016 0 1 195169376 NT_004487.20 51984789
ss1288372 OVLP-000804-209303 A/T 4 rs866867 0 1 234824730 NT_167186.2 11215795
ss1288376 OVLP-000804-262763 A/G 4 rs866869 0 10 25479896 NT_008705.17 25469896
ss1288362 OVLP-000804-64771 C/T 4 rs866864 0 10 77473095 NT_030059.14 35779574
ss1288363 OVLP-000804-64802 A/G 4 rs866865 0 10 77487346 NT_030059.14 35793825
ss1288355 OVLP-000804-9627 A/G 4 rs192767 0 10 88705326 NT_030059.14 47011805
ss1288369 OVLP-000804-206154 A/G 4 rs1104497 0 12 53089334 NT_029419.13 15854082
ss1288371 OVLP-000804-208161 A/C 4 rs184921 1 12 125382195 NT_029419.13 88146943
ss1288375 OVLP-000804-261635 G/T 4 rs193385 0 13 43718486 NT_024524.15 25310380
ss1288377 OVLP-000804-266164 A/C 4 rs530263 1 13 63949830 NT_024524.15 45541724
ss1288379 OVLP-000804-283994 C/G 4 rs193409 1 16 73821084 NT_010498.16 27440402
ss1288378 OVLP-000804-283055 C/T 4 rs193412 0 18 32659496 NT_010966.15 11748290
ss1288366 OVLP-000804-117324 A/G 4 rs193361 0 19 48185247 NT_011109.17 20944373
ss1288361 OVLP-000804-63808 A/C 4 rs193424 1 20 60475006 NT_011362.11 29423498
ss1288367 OVLP-000804-155874 A/C 4 rs193414 0 21 26895383 NT_011512.12 13929575
ss1288356 OVLP-000804-12644 A/T 4 rs193350 0 3 65807648 NT_022517.19 65797648
ss1288383 OVLP-000804-347664 A/G 4 rs866873 0 3 98822168 NT_005612.17 5116594
ss1288381 OVLP-000804-300893 C/T 4 rs186976 0 3 103069597 NT_005612.17 9364023
ss1288360 OVLP-000804-46424 C/T 4 rs192922 1 5 23857248 NT_006576.17 23847248
ss1288357 OVLP-000804-26763 A/G 4 rs160931 0 5 56188363 NT_034772.7 6078556
ss1288384 OVLP-000804-351288 A/G 4 rs40203 0 5 59203624 NT_034772.7 9093817
ss1288380 OVLP-000804-286931 C/T 4 rs193389 0 5 163263546 NT_023133.14 7502222
ss1288359 OVLP-000804-46210 A/T 4 rs193348 0 6 42461741 NT_007592.16 42401741
ss1288365 OVLP-000804-101883 C/T 4 rs193430 1 7 57962622 NT_007819.18 57952622
ss1288364 OVLP-000804-94554 C/T 4 rs193422 0 8 49088750 NT_008183.20 3161485
30 of 74 subsnp's starting at ss1288374. ss# starting at ss

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