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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-1-1
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:1573
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1625338 OVLP-000925-1648 C/G 4 rs309647 0 1 103632301 NT_032977.10 103046313
ss1625347 OVLP-000925-3570 A/T 4 rs167447 1 1 103713856 NT_032977.10 103127868
ss1625335 OVLP-000925-1158 G/T 4 rs238932 0 11 114096952 NT_033899.9 26094056
ss1625340 OVLP-000925-1695 A/G 4 rs710630 0 12 67303537 NT_029419.13 30068285
ss1625339 OVLP-000925-1691 C/T 4 rs1136080 1 12 67315856 NT_029419.13 30080604
ss1625341 OVLP-000925-1725 C/T 4 rs1177317 0 12 67334242 NT_029419.13 30098990
ss1625344 OVLP-000925-3161 C/T 4 rs1177319 0 13 28634917 NT_024524.15 10226811
ss1625345 OVLP-000925-3221 C/T 4 rs1300239 0 13 28716316 NT_024524.15 10308210
ss1625359 OVLP-000925-9491 A/G 4 rs585040 1 20 2926249 NT_011387.9 2866249
ss1625362 OVLP-000925-11675 C/T 4 rs166799 0 3 1499697 NT_022517.19 1489697
ss1625348 OVLP-000925-3611 G/T 4 rs189823 0 3 8364674 NT_022517.19 8354674
ss1625349 OVLP-000925-3643 C/T 4 rs1177320 0 3 8378904 NT_022517.19 8368904
ss1625350 OVLP-000925-3645 A/T 4 rs1177321 0 3 8388422 NT_022517.19 8378422
ss1625351 OVLP-000925-3651 C/T 4 rs1177322 0 3 8391300 NT_022517.19 8381300
ss1625352 OVLP-000925-3689 C/T 4 rs242831 0 3 8435203 NT_022517.19 8425203
ss1625355 OVLP-000925-7056 C/T 4 rs358281 0 3 8435931 NT_022517.19 8425931
ss1625356 OVLP-000925-9217 A/C 4 rs168152 0 4 85418701 NT_016354.20 26497320
ss1625357 OVLP-000925-9223 C/T 4 rs168153 0 4 85419543 NT_016354.20 26498162
ss1625358 OVLP-000925-9249 C/T 4 rs168154 0 4 85437130 NT_016354.20 26515749
ss1625361 OVLP-000925-11211 C/G 4 rs1177325 0 5 60832605 NT_034772.7 10722798
ss1625360 OVLP-000925-9796 C/G 4 rs167037 1 5 60904824 NT_034772.7 10795017
ss1625337 OVLP-000925-1411 A/T 4 rs165988 0 5 76352587 NT_034772.7 26242780
ss1625334 OVLP-000925-814 A/C 4 rs167823 0 5 100247757 NT_034772.7 50137950
ss1625336 OVLP-000925-1300 A/G 4 rs167788 0 5 100273742 NT_034772.7 50163935
ss1625343 OVLP-000925-2844 C/G 4 rs161864 0 5 100290643 NT_034772.7 50180836
ss1625333 OVLP-000925-409 C/G 4 rs161502 0 5 100302984 NT_034772.7 50193177
ss1625342 OVLP-000925-2825 A/G 4 rs161316 0 5 100319517 NT_034772.7 50209710
ss1625346 OVLP-000925-3533 C/G 4 N.D. N.D.
ss1625353 OVLP-000925-4686 C/G 4 N.D. N.D.
ss1625354 OVLP-000925-4702 G/T 4 N.D. N.D.
30 of 1573 subsnp's starting at ss1625338. ss# starting at ss

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