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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-1-4
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:987
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1651466 OVLP-000925-11634 A/G 4 rs648116 0 11 114160034 NT_033899.9 26157138
ss1651465 OVLP-000925-11633 C/T 4 rs648044 0 11 114160077 NT_033899.9 26157181
ss1651457 OVLP-000925-7955 A/G 4 rs665731 0 11 114161762 NT_033899.9 26158866
ss1651464 OVLP-000925-11599 C/T 4 rs546752 0 11 114180404 NT_033899.9 26177508
ss1651460 OVLP-000925-8000 A/G 4 rs1183130 0 11 114204145 NT_033899.9 26201249
ss1651459 OVLP-000925-7996 A/T 4 rs1183129 0 11 114205097 NT_033899.9 26202201
ss1651458 OVLP-000925-7989 C/G 4 rs552080 1 11 114207592 NT_033899.9 26204696
ss1651456 OVLP-000925-7937 C/G 4 rs656123 0 11 114228403 NT_033899.9 26225507
ss1651463 OVLP-000925-11537 C/T 4 rs404509 0 11 114243655 NT_033899.9 26240759
ss1651450 OVLP-000925-1730 A/C 4 rs1183126 0 12 67332372 NT_029419.13 30097120
ss1651471 OVLP-000925-16844 A/G 4 rs172905 0 13 28922907 NT_024524.15 10514801
ss1651467 OVLP-000925-12285 A/C 4 rs173318 0 17 70604491 NT_010783.16 43668511
ss1651461 OVLP-000925-10102 C/T 4 rs172365 0 2 239230446 NT_005403.18 144734431
ss1651469 OVLP-000925-15545 A/G 4 rs172171 0 3 1486904 NT_022517.19 1476904
ss1651455 OVLP-000925-7049 A/G 4 rs356421 1 3 8488662 NT_022517.19 8478662
ss1651468 OVLP-000925-12903 A/G 4 rs356421 1 3 8488662 NT_022517.19 8478662
ss1651472 OVLP-000925-17321 A/C 4 rs173201 0 4 85966707 NT_016354.20 27045326
ss1651444 OVLP-000925-483 C/G 4 rs167240 0 5 61237214 NT_034772.7 11127407
ss1651473 OVLP-000925-17409 C/T 4 rs27941 0 5 83044617 NT_034772.7 32934810
ss1651470 OVLP-000925-16570 A/G 4 rs1183133 0 5 83046952 NT_034772.7 32937145
ss1651462 OVLP-000925-10829 A/T 4 rs1183131 0 5 99770538 NT_034772.7 49660731
ss1651445 OVLP-000925-819 A/T 4 rs161317 0 5 100303087 NT_034772.7 50193280
ss1651452 OVLP-000925-5877 A/G 4 rs484965 0 6 50964793 NT_007592.16 50904793
ss1651453 OVLP-000925-5879 A/G 4 rs579544 0 6 50985602 NT_007592.16 50925602
ss1651454 OVLP-000925-6567 A/C 4 rs156070 0 8 3325210 NT_023736.18 3265210
ss1651447 OVLP-000925-1029 A/C 4 rs155327 0 8 3335569 NT_023736.18 3275569
ss1651448 OVLP-000925-1030 C/G 4 rs149808 0 8 3335665 NT_023736.18 3275665
ss1651446 OVLP-000925-854 A/G 4 rs1183125 0 9 42684967 NT_008413.19 42674967
ss1651449 OVLP-000925-1344 G/T 4 N.D. N.D.
ss1651451 OVLP-000925-4726 G/T 4 N.D. N.D.
30 of 987 subsnp's starting at ss1651466. ss# starting at ss

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