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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-1-7
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:263
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1656627 OVLP-000925-11580 A/C 4 rs617034 0 11 114209999 NT_033899.9 26207103
ss1656637 OVLP-000925-32935 C/G 4 rs703547 0 12 102549929 NT_029419.13 65314677
ss1656643 OVLP-000925-45430 A/G 4 rs862987 0 12 102643573 NT_029419.13 65408321
ss1656638 OVLP-000925-34237 G/T 4 rs1184679 0 17 70436907 NT_010783.16 43500927
ss1656628 OVLP-000925-12287 G/T 4 rs183590 0 17 70649461 NT_010783.16 43713481
ss1656629 OVLP-000925-12288 A/G 4 rs183591 0 17 70650157 NT_010783.16 43714177
ss1656630 OVLP-000925-12290 C/T 4 rs183592 0 17 70650678 NT_010783.16 43714698
ss1656631 OVLP-000925-12294 G/T 4 rs183593 0 17 70668360 NT_010783.16 43732380
ss1656632 OVLP-000925-13148 A/G 4 rs183501 0 3 18572000 NT_022517.19 18562000
ss1656634 OVLP-000925-20375 A/G 4 rs864071 1 3 130893778 NT_005612.17 37188204
ss1656635 OVLP-000925-20386 C/T 4 rs864072 0 3 130930853 NT_005612.17 37225279
ss1656624 OVLP-000925-498 G/T 4 rs177114 0 5 61210242 NT_034772.7 11100435
ss1656636 OVLP-000925-21309 C/G 4 rs183475 0 5 91677473 NT_034772.7 41567666
ss1656625 OVLP-000925-795 C/T 4 rs150924 0 5 100347563 NT_034772.7 50237756
ss1656651 OVLP-000925-59607 G/T 4 rs42860 0 5 103092414 NT_034772.7 52982607
ss1656652 OVLP-000925-59656 C/T 4 rs34769 0 5 103111523 NT_034772.7 53001716
ss1656653 OVLP-000925-59691 A/G 4 rs28043 0 5 103150368 NT_034772.7 53040561
ss1656649 OVLP-000925-59540 A/G 4 rs28062 0 5 103204500 NT_034772.7 53094693
ss1656650 OVLP-000925-59547 A/G 4 rs28061 0 5 103208177 NT_034772.7 53098370
ss1656633 OVLP-000925-13798 C/T 4 rs173849 0 5 134780865 NT_034772.7 84671058
ss1656626 OVLP-000925-7531 A/G 4 rs177252 0 5 135008109 NT_034772.7 84898302
ss1656641 OVLP-000925-43340 C/T 4 rs464290 0 5 141619260 NT_029289.12 2165601
ss1656646 OVLP-000925-55239 A/T 4 rs183132 1 5 141745059 NT_029289.12 2291400
ss1656648 OVLP-000925-58768 C/G 4 rs42757 0 5 141757730 NT_029289.12 2304071
ss1656647 OVLP-000925-58753 A/T 4 rs152267 0 5 141797294 NT_029289.12 2343635
ss1656645 OVLP-000925-49498 C/T 4 rs761264 0 6 150824142 NT_025741.16 90594208
ss1656639 OVLP-000925-35887 A/C 4 rs122617 0 7 18241315 NT_007819.18 18231315
ss1656640 OVLP-000925-35949 A/G 4 rs177340 0 7 18265381 NT_007819.18 18255381
ss1656644 OVLP-000925-47440 A/G 4 rs175528 0 7 23411959 NT_007819.18 23401959
ss1656642 OVLP-000925-44593 A/G 4 rs811641 0 9 27548612 NT_008413.19 27538612
30 of 263 subsnp's starting at ss1656627. ss# starting at ss

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