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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-1-15
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:682
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1659987 OVLP-000925-1790 C/T 4 rs1185918 0 12 67346844 NT_029419.13 30111592
ss1659986 OVLP-000925-1680 G/T 4 rs879536291 0 12 67380453 NT_029419.13 30145201
ss1660002 OVLP-000925-20823 A/G 4 rs191621 0 17 70570791 NT_010783.16 43634811
ss1660007 OVLP-000925-24390 A/G 4 rs191621 0 17 70570791 NT_010783.16 43634811
ss1660003 OVLP-000925-20839 C/G 4 rs191622 0 17 70576047 NT_010783.16 43640067
ss1660008 OVLP-000925-24391 C/G 4 rs191622 0 17 70576047 NT_010783.16 43640067
ss1660000 OVLP-000925-15558 G/T 4 rs190723 0 3 1606699 NT_022517.19 1596699
ss1659990 OVLP-000925-3592 C/T 4 rs358274 1 3 8447624 NT_022517.19 8437624
ss1659999 OVLP-000925-13102 A/C 4 rs191399 0 3 18551491 NT_022517.19 18541491
ss1660006 OVLP-000925-22760 A/G 4 rs187676 0 5 82999287 NT_034772.7 32889480
ss1660001 OVLP-000925-16567 A/G 4 rs816773 0 5 83046979 NT_034772.7 32937172
ss1659979 OVLP-000925-380 C/T 4 rs191218 0 5 100310834 NT_034772.7 50201027
ss1659980 OVLP-000925-382 A/G 4 rs161682 0 5 100312730 NT_034772.7 50202923
ss1659983 OVLP-000925-1286 C/G 4 rs191246 1 5 100328627 NT_034772.7 50218820
ss1659991 OVLP-000925-4409 C/T 4 rs1185921 0 6 50915930 NT_007592.16 50855930
ss1659992 OVLP-000925-4427 C/T 4 rs1185922 0 6 51049264 NT_007592.16 50989264
ss1659998 OVLP-000925-12506 A/G 4 rs813902 1 7 18669285 NT_007819.18 18659285
ss1659981 OVLP-000925-539 A/G 4 rs1185914 0 7 133336908 NT_007933.16 70830129
ss1659982 OVLP-000925-555 A/C 4 rs1149563 0 7 133351931 NT_007933.16 70845152
ss1660005 OVLP-000925-22002 A/G 4 rs190686 0 7 138124548 NT_007933.16 75617769
ss1660004 OVLP-000925-21991 C/T 4 rs190687 0 7 138165742 NT_007933.16 75658963
ss1659997 OVLP-000925-6581 C/T 4 rs190535 0 8 3347856 NT_023736.18 3287856
ss1659996 OVLP-000925-6565 C/T 4 rs1104305 0 8 3354667 NT_023736.18 3294667
ss1659984 OVLP-000925-1325 C/G 4 N.D. N.D.
ss1659985 OVLP-000925-1326 C/T 4 N.D. N.D.
ss1659988 OVLP-000925-3534 C/G 4 N.D. N.D.
ss1659989 OVLP-000925-3535 C/T 4 N.D. N.D.
ss1659993 OVLP-000925-4687 C/G 4 N.D. N.D.
ss1659994 OVLP-000925-4688 C/T 4 N.D. N.D.
ss1659995 OVLP-000925-4721 C/G 4 N.D. N.D.
30 of 682 subsnp's starting at ss1659987. ss# starting at ss

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