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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-1-16
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:23
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1660681 OVLP-000925-535662 A/G 4 rs191755 0 11 111055215 NT_033899.9 23052319
ss1660675 OVLP-000925-309764 A/C 4 rs642001 0 11 119042224 NT_033899.9 31039328
ss1660676 OVLP-000925-327442 A/T 4 rs550974 0 11 119066395 NT_033899.9 31063499
ss1660674 OVLP-000925-287051 G/T 4 rs541507 1 11 131902775 NT_033899.9 43899879
ss1660673 OVLP-000925-267193 C/T 4 rs1186188 0 12 43790668 NT_029419.13 6555416
ss1660667 OVLP-000925-189881 C/T 4 rs191741 0 12 59469005 NT_029419.13 22233753
ss1660669 OVLP-000925-221258 A/G 4 rs1186186 0 12 120375816 NT_029419.13 83140564
ss1660678 OVLP-000925-358735 A/C 4 rs813862 0 17 74889701 NT_010783.16 47953721
ss1660682 OVLP-000925-554783 C/G 4 rs191423 1 18 26962143 NT_010966.15 6050937
ss1660665 OVLP-000925-139714 A/G 4 rs627152 0 2 74815845 NT_022184.16 58669726
ss1660664 OVLP-000925-108896 A/G 4 rs805307 0 3 9655333 NT_022517.19 9645333
ss1660677 OVLP-000925-333552 A/G 4 rs149162 1 3 10300578 NT_022517.19 10290578
ss1660672 OVLP-000925-261109 A/G 4 rs676220 0 3 47734263 NT_022517.19 47724263
ss1660683 OVLP-000925-555688 A/G 4 rs191348 1 3 78963148 NT_022517.19 78953148
ss1660663 OVLP-000925-107691 C/T 4 rs1186182 0 3 104787902 NT_005612.17 11082328
ss1660662 OVLP-000925-86151 A/C 4 rs1186181 0 3 154461144 NT_005612.17 60755570
ss1660666 OVLP-000925-143373 A/C 4 rs176012 0 3 193554837 NT_005612.17 99849263
ss1660670 OVLP-000925-227661 A/C 4 rs694792 0 4 129614275 NT_016354.20 70692894
ss1660680 OVLP-000925-490338 A/G 4 rs191720 1 5 50810056 NT_034772.7 700249
ss1660661 OVLP-000925-1453 C/T 4 rs191721 0 5 76336225 NT_034772.7 26226418
ss1660679 OVLP-000925-443376 C/G 4 rs1186189 0 9 90694319 NT_008470.20 22473767
ss1660668 OVLP-000925-202378 C/T 4 N.D. N.D.
ss1660671 OVLP-000925-257328 C/T 4 N.D. N.D.
23 of 23 subsnp's starting at ss1660681.This is the last page.

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