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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-2-0
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:54218
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1661477 OVLP-000925-891 A/G 4 rs1186499 0 13 89599746 NT_009952.15 3346767
ss1661478 OVLP-000925-895 C/G 4 rs1186500 0 13 89600578 NT_009952.15 3347599
ss1661479 OVLP-000925-896 C/G 4 rs1186501 0 13 89601269 NT_009952.15 3348290
ss1661480 OVLP-000925-900 A/G 4 rs1186502 0 13 89609979 NT_009952.15 3357000
ss1661481 OVLP-000925-901 A/C 4 rs978852 1 13 89610163 NT_009952.15 3357184
ss1661482 OVLP-000925-902 A/C 4 rs913229 1 13 89610543 NT_009952.15 3357564
ss1661483 OVLP-000925-903 C/T 4 rs1186504 0 13 89612266 NT_009952.15 3359287
ss1661484 OVLP-000925-904 A/T 4 rs1186505 0 13 89613288 NT_009952.15 3360309
ss1661467 OVLP-000925-658 A/G 4 rs777584 0 2 61183211 NT_022184.16 45037092
ss1661468 OVLP-000925-659 C/T 4 rs777585 0 2 61185424 NT_022184.16 45039305
ss1661473 OVLP-000925-670 C/G 4 rs777590 0 2 61190010 NT_022184.16 45043891
ss1661474 OVLP-000925-671 A/G 4 rs777591 0 2 61190482 NT_022184.16 45044363
ss1661475 OVLP-000925-672 C/G 4 rs777592 0 2 61191208 NT_022184.16 45045089
ss1661476 OVLP-000925-673 A/C 4 rs777593 0 2 61191968 NT_022184.16 45045849
ss1661472 OVLP-000925-666 A/G 4 rs777589 0 2 61198486 NT_022184.16 45052367
ss1661471 OVLP-000925-665 C/T 4 rs777588 0 2 61199685 NT_022184.16 45053566
ss1661470 OVLP-000925-664 C/T 4 rs777587 0 2 61200540 NT_022184.16 45054421
ss1661469 OVLP-000925-663 C/T 4 rs777586 0 2 61201509 NT_022184.16 45055390
ss1661496 OVLP-000925-928 G/T 4 rs256641 1 5 33538423 NT_006576.17 33528423
ss1661495 OVLP-000925-927 C/G 4 rs256642 1 5 33539066 NT_006576.17 33529066
ss1661494 OVLP-000925-926 A/G 4 rs256643 1 5 33539092 NT_006576.17 33529092
ss1661493 OVLP-000925-925 G/T 4 rs256644 1 5 33539186 NT_006576.17 33529186
ss1661492 OVLP-000925-924 C/T 4 rs256645 1 5 33539261 NT_006576.17 33529261
ss1661491 OVLP-000925-923 C/G 4 rs256646 1 5 33539988 NT_006576.17 33529988
ss1661490 OVLP-000925-922 C/T 4 rs171759 1 5 33540313 NT_006576.17 33530313
ss1661489 OVLP-000925-921 G/T 4 rs185366 1 5 33540341 NT_006576.17 33530341
ss1661488 OVLP-000925-920 C/T 4 rs256647 1 5 33540347 NT_006576.17 33530347
ss1661487 OVLP-000925-919 A/G 4 rs256648 1 5 33540726 NT_006576.17 33530726
ss1661486 OVLP-000925-918 A/G 4 rs464719 1 5 33541422 NT_006576.17 33531422
ss1661485 OVLP-000925-917 A/T 4 rs395298 1 5 33541563 NT_006576.17 33531563
30 of 54218 subsnp's starting at ss1661477. ss# starting at ss

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