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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-2-2
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:28327
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1717079 OVLP-000925-749 A/G 4 rs231201 0 4 1990941 NT_006051.19 1980941
ss1717078 OVLP-000925-748 G/T 4 rs231200 0 4 1991279 NT_006051.19 1981279
ss1717077 OVLP-000925-743 A/G 4 rs231199 0 4 1999385 NT_006051.19 1989385
ss1717076 OVLP-000925-727 A/G 4 rs231198 0 4 2001928 NT_006051.19 1991928
ss1717075 OVLP-000925-724 C/T 4 rs231197 0 4 2002061 NT_006051.19 1992061
ss1717074 OVLP-000925-723 C/T 4 rs231196 0 4 2002132 NT_006051.19 1992132
ss1717073 OVLP-000925-722 C/T 4 rs231195 0 4 2002625 NT_006051.19 1992625
ss1717072 OVLP-000925-720 C/T 4 rs231194 0 4 2003033 NT_006051.19 1993033
ss1717071 OVLP-000925-714 A/G 4 rs231193 0 4 2003204 NT_006051.19 1993204
ss1717070 OVLP-000925-708 A/T 4 rs1308564 0 4 2003856 NT_006051.19 1993856
ss1717069 OVLP-000925-707 G/T 4 rs231192 0 4 2003978 NT_006051.19 1993978
ss1717068 OVLP-000925-700 A/C 4 rs231191 0 4 2005997 NT_006051.19 1995997
ss1717067 OVLP-000925-689 C/T 4 rs231190 0 4 2008436 NT_006051.19 1998436
ss1717066 OVLP-000925-688 A/C 4 rs170756 0 4 2008582 NT_006051.19 1998582
ss1717065 OVLP-000925-682 C/G 4 rs231189 0 4 2009104 NT_006051.19 1999104
ss1717064 OVLP-000925-681 A/C 4 rs398377 0 4 2009246 NT_006051.19 1999246
ss1717063 OVLP-000925-677 G/T 4 rs425689 0 4 2011442 NT_006051.19 2001442
ss1717083 OVLP-000925-1052 C/G 4 rs314591 0 7 4434363 NT_007819.18 4424363
ss1717084 OVLP-000925-1053 A/G 4 rs314590 0 7 4434501 NT_007819.18 4424501
ss1717085 OVLP-000925-1054 C/T 4 rs314589 0 7 4434749 NT_007819.18 4424749
ss1717086 OVLP-000925-1055 A/G 4 rs314588 0 7 4435051 NT_007819.18 4425051
ss1717087 OVLP-000925-1056 C/T 4 rs314587 0 7 4435074 NT_007819.18 4425074
ss1717088 OVLP-000925-1057 A/C 4 rs314586 0 7 4435453 NT_007819.18 4425453
ss1717089 OVLP-000925-1058 G/T 4 rs314585 0 7 4436124 NT_007819.18 4426124
ss1717090 OVLP-000925-1060 A/G 4 rs314584 0 7 4437187 NT_007819.18 4427187
ss1717091 OVLP-000925-1061 C/T 4 rs314583 0 7 4437381 NT_007819.18 4427381
ss1717092 OVLP-000925-1062 A/C 4 rs314582 0 7 4437393 NT_007819.18 4427393
ss1717082 OVLP-000925-1034 A/G 4 rs1201841 0 7 88002211 NT_007933.16 25495432
ss1717081 OVLP-000925-1033 C/T 4 rs1201840 0 7 88006597 NT_007933.16 25499818
ss1717080 OVLP-000925-1031 G/T 4 rs1201839 0 7 88030779 NT_007933.16 25524000
30 of 28327 subsnp's starting at ss1717079. ss# starting at ss

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