NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-2-13
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:63
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1755303 OVLP-000925-85362 C/T 4 rs189826 0 11 18462066 NT_009237.19 18402066
ss1755293 OVLP-000925-13485 A/C 4 rs542092 0 11 63692811 NT_167190.2 9167737
ss1755292 OVLP-000925-13426 C/T 4 rs480271 1 11 63712588 NT_167190.2 9187514
ss1755291 OVLP-000925-13425 A/C 4 rs545308 0 11 63759807 NT_167190.2 9234733
ss1755296 OVLP-000925-22630 G/T 4 rs1308511 0 11 63799641 NT_167190.2 9274567
ss1755317 OVLP-000925-225142 G/T 4 rs1212528 1 11 65948987 NT_167190.2 11423913
ss1755299 OVLP-000925-39099 A/C 4 rs641408 0 11 66764969 NT_167190.2 12239895
ss1755295 OVLP-000925-16890 C/T 4 rs1212515 0 11 92434036 NT_033899.9 4431140
ss1755312 OVLP-000925-148571 A/G 4 rs1212523 0 12 128863657 NT_029419.13 91628405
ss1755315 OVLP-000925-189315 A/T 4 rs1212526 0 14 29501443 NT_026437.13 11277920
ss1755302 OVLP-000925-72294 A/G 4 rs1152459 0 14 56069542 NT_026437.13 37846019
ss1755309 OVLP-000925-130743 A/T 4 rs860325 0 14 56877400 NT_026437.13 38653877
ss1755300 OVLP-000925-44788 A/G 4 rs1212517 0 14 95382044 NT_026437.13 77158521
ss1755314 OVLP-000925-167959 C/T 4 rs1212525 0 14 100026161 NT_026437.13 81802638
ss1755298 OVLP-000925-38158 A/T 4 rs1212516 0 14 103939664 NT_026437.13 85716141
ss1755294 OVLP-000925-15024 C/T 4 rs1309411 0 16 54549929 NT_010498.16 8169247
ss1755318 OVLP-000925-235125 C/G 4 rs184051 0 18 10306952 NT_010859.15 10296952
ss1755316 OVLP-000925-192725 C/T 4 rs1212527 0 18 10567325 NT_010859.15 10557325
ss1755308 OVLP-000925-128875 A/G 4 rs190195 1 20 3616208 NT_011387.9 3556208
ss1755297 OVLP-000925-33965 C/G 4 rs1151995 0 3 13537936 NT_022517.19 13527936
ss1755304 OVLP-000925-86401 A/G 4 rs189717 0 3 186808388 NT_005612.17 93102814
ss1755306 OVLP-000925-93223 G/T 4 rs189760 0 4 38876197 NT_006238.12 6037181
ss1755301 OVLP-000925-56803 G/T 4 rs189818 0 4 67366709 NT_016354.20 8445328
ss1755319 OVLP-000925-265969 A/C 4 rs1212530 0 4 155382950 NT_016354.20 96461569
ss1755311 OVLP-000925-134205 C/T 4 rs813301 0 5 53614097 NT_034772.7 3504290
ss1755310 OVLP-000925-134135 A/T 4 rs377159 0 5 53645320 NT_034772.7 3535513
ss1755307 OVLP-000925-115214 G/T 4 rs164393 0 5 69113267 NT_034772.7 19003460
ss1755313 OVLP-000925-161065 A/G 4 rs813308 0 5 128436387 NT_034772.7 78326580
ss1755290 OVLP-000925-9733 G/T 4 rs1212513 0 6 34415865 NT_007592.16 34355865
ss1755305 OVLP-000925-86827 A/G 4 rs477294 0 8 13095793 NT_167187.2 811448
30 of 63 subsnp's starting at ss1755303. ss# starting at ss

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement