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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-2-14
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:190
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1755370 OVLP-000925-59294 C/T 4 rs554234 0 11 66643312 NT_167190.2 12118238
ss1755361 OVLP-000925-31459 A/C 4 rs1144791 1 11 66667887 NT_167190.2 12142813
ss1755375 OVLP-000925-80126 A/T 4 rs646583 0 11 66681821 NT_167190.2 12156747
ss1755359 OVLP-000925-17770 G/T 4 rs584610 0 11 66742333 NT_167190.2 12217259
ss1755358 OVLP-000925-17725 A/C 4 rs1212548 0 11 66774685 NT_167190.2 12249611
ss1755382 OVLP-000925-129807 C/T 4 rs524474 0 18 10886499 NT_010859.15 10876499
ss1755381 OVLP-000925-124355 C/T 4 rs190195 0 20 3616208 NT_011387.9 3556208
ss1755372 OVLP-000925-64164 C/T 4 rs865884 0 20 55656127 NT_011362.11 24604619
ss1755373 OVLP-000925-64181 A/G 4 rs391871 0 20 55676766 NT_011362.11 24625258
ss1755366 OVLP-000925-51307 C/G 4 rs191723 0 3 173421665 NT_005612.17 79716091
ss1755367 OVLP-000925-51330 A/C 4 rs573553 0 3 173486475 NT_005612.17 79780901
ss1755369 OVLP-000925-57563 A/T 4 rs813413 0 3 173489813 NT_005612.17 79784239
ss1755378 OVLP-000925-100791 A/G 4 rs865880 0 3 186730634 NT_005612.17 93025060
ss1755353 OVLP-000925-709 A/C 4 rs1309417 0 4 2003832 NT_006051.19 1993832
ss1755368 OVLP-000925-54304 A/G 4 rs190255 1 4 67510990 NT_016354.20 8589609
ss1755363 OVLP-000925-36674 A/T 4 rs187382 0 5 58321003 NT_034772.7 8211196
ss1755354 OVLP-000925-2459 A/T 4 rs187368 0 5 59384216 NT_034772.7 9274409
ss1755360 OVLP-000925-20336 G/T 4 rs865892 0 5 60095366 NT_034772.7 9985559
ss1755355 OVLP-000925-10415 C/T 4 rs1212547 0 6 20146276 NT_007592.16 20086276
ss1755356 OVLP-000925-10423 C/G 4 rs865806 0 6 20166753 NT_007592.16 20106753
ss1755376 OVLP-000925-91204 C/T 4 rs367353 0 6 87326166 NT_025741.16 27096232
ss1755377 OVLP-000925-92200 G/T 4 rs190262 0 6 87360889 NT_025741.16 27130955
ss1755379 OVLP-000925-118179 C/T 4 rs190050 0 6 152377563 NT_025741.16 92147629
ss1755380 OVLP-000925-118247 A/G 4 rs190051 0 6 152415825 NT_025741.16 92185891
ss1755364 OVLP-000925-40046 C/T 4 rs1212550 0 6 166944745 NT_025741.16 106714811
ss1755371 OVLP-000925-61745 C/T 4 rs417077 0 6 169047518 NT_025741.16 108817584
ss1755365 OVLP-000925-42388 A/G 4 rs1212551 0 7 71199580 NT_007933.16 8692801
ss1755362 OVLP-000925-35097 G/T 4 rs187993 0 7 86634364 NT_007933.16 24127585
ss1755374 OVLP-000925-76641 A/G 4 rs187834 0 7 103905165 NT_007933.16 41398386
ss1755357 OVLP-000925-17514 C/G 4 rs865930 0 7 149771330 NT_007933.16 87264551
30 of 190 subsnp's starting at ss1755370. ss# starting at ss

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