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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-4-3
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:1633
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1847311 OVLP-000925-15771 C/G 4 rs151311 0 1 58595876 NT_032977.10 58009888
ss1847310 OVLP-000925-15769 G/T 4 rs170827 0 1 58615861 NT_032977.10 58029873
ss1847313 OVLP-000925-15911 A/G 4 rs170826 0 1 58627727 NT_032977.10 58041739
ss1847312 OVLP-000925-15904 A/C 4 rs170828 0 1 58635462 NT_032977.10 58049474
ss1847296 OVLP-000925-12013 A/G 4 rs1234517 0 1 164835008 NT_004487.20 21650421
ss1847290 OVLP-000925-5226 C/G 4 rs709881 0 14 84926582 NT_026437.13 66703059
ss1847291 OVLP-000925-5267 C/T 4 rs709857 0 14 84982277 NT_026437.13 66758754
ss1847292 OVLP-000925-8336 C/G 4 rs42362 0 16 9344506 NT_010393.17 9334506
ss1847300 OVLP-000925-12480 C/T 4 rs183136 0 16 9431350 NT_010393.17 9421350
ss1847301 OVLP-000925-12482 A/G 4 rs171601 1 16 9433094 NT_010393.17 9423094
ss1847303 OVLP-000925-13594 A/G 4 rs316372 0 16 9642471 NT_010393.17 9632471
ss1847304 OVLP-000925-13600 A/C 4 rs316374 0 16 9645104 NT_010393.17 9635104
ss1847305 OVLP-000925-13606 A/T 4 rs316378 0 16 9648635 NT_010393.17 9638635
ss1847306 OVLP-000925-13615 A/C 4 rs316380 0 16 9652391 NT_010393.17 9642391
ss1847307 OVLP-000925-13618 C/G 4 rs178401 0 16 9653468 NT_010393.17 9643468
ss1847308 OVLP-000925-13622 C/T 4 rs316382 0 16 9659256 NT_010393.17 9649256
ss1847288 OVLP-000925-3899 C/G 4 rs170231 0 17 67780658 NT_010783.16 40844678
ss1847317 OVLP-000925-18568 G/T 4 rs355827 0 2 164755938 NT_005403.18 70259923
ss1847316 OVLP-000925-18527 C/T 4 rs355857 0 2 164772704 NT_005403.18 70276689
ss1847315 OVLP-000925-18410 G/T 4 rs355807 0 2 164824210 NT_005403.18 70328195
ss1847294 OVLP-000925-10661 A/G 4 rs860317 0 3 195537041 NT_005612.17 101831467
ss1847314 OVLP-000925-17423 A/T 4 rs1234521 0 4 107165694 NT_016354.20 48244313
ss1847289 OVLP-000925-4053 A/C 4 rs1312030 0 5 65011495 NT_034772.7 14901688
ss1847295 OVLP-000925-11433 G/T 4 rs39890 1 5 111487756 NT_034772.7 61377949
ss1847302 OVLP-000925-13043 A/C 4 rs39890 0 5 111487756 NT_034772.7 61377949
ss1847309 OVLP-000925-14874 A/C 4 rs247531 0 5 111556078 NT_034772.7 61446271
ss1847299 OVLP-000925-12179 A/G 4 rs168638 0 5 129895974 NT_034772.7 79786167
ss1847293 OVLP-000925-9776 G/T 4 rs220827 0 6 165427681 NT_025741.16 105197747
ss1847297 OVLP-000925-12025 C/T 4 rs221748 0 6 165452169 NT_025741.16 105222235
ss1847298 OVLP-000925-12113 A/G 4 rs221728 0 6 165488779 NT_025741.16 105258845
30 of 1633 subsnp's starting at ss1847311. ss# starting at ss

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