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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-4-4
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:936
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1848944 OVLP-000925-24891 C/G 4 rs1234915 0 10 35143181 NT_008705.17 35133181
ss1848935 OVLP-000925-17817 A/C 4 rs621591 1 11 85572514 NT_167190.2 31047440
ss1848943 OVLP-000925-23776 G/T 4 rs621591 0 11 85572514 NT_167190.2 31047440
ss1848940 OVLP-000925-21678 C/G 4 rs861437 0 12 127522885 NT_029419.13 90287633
ss1848947 OVLP-000925-28149 C/G 4 rs701064 1 12 127537821 NT_029419.13 90302569
ss1848922 OVLP-000925-5624 A/G 4 rs1234907 0 16 9285913 NT_010393.17 9275913
ss1848925 OVLP-000925-8396 C/G 4 rs171604 0 16 9372301 NT_010393.17 9362301
ss1848926 OVLP-000925-8397 A/G 4 rs171603 1 16 9373954 NT_010393.17 9363954
ss1848924 OVLP-000925-8290 A/T 4 rs861384 0 16 9405824 NT_010393.17 9395824
ss1848930 OVLP-000925-13607 C/G 4 rs861389 0 16 9650184 NT_010393.17 9640184
ss1848931 OVLP-000925-13624 C/T 4 rs167576 0 16 9660338 NT_010393.17 9650338
ss1848932 OVLP-000925-13627 C/T 4 rs167577 0 16 9660512 NT_010393.17 9650512
ss1848933 OVLP-000925-13628 A/G 4 rs167578 0 16 9660522 NT_010393.17 9650522
ss1848941 OVLP-000925-23325 G/T 4 rs1071458 0 16 10135061 NT_010393.17 10125061
ss1848942 OVLP-000925-23335 A/G 4 rs1103127 0 16 10140907 NT_010393.17 10130907
ss1848948 OVLP-000925-28514 C/G 4 rs1070473 1 16 10149934 NT_010393.17 10139934
ss1848938 OVLP-000925-18461 A/G 4 rs168546 1 2 164788014 NT_005403.18 70291999
ss1848937 OVLP-000925-18409 A/G 4 rs168544 0 2 164825918 NT_005403.18 70329903
ss1848936 OVLP-000925-18402 A/G 4 rs168545 0 2 164833174 NT_005403.18 70337159
ss1848950 OVLP-000925-30191 A/G 4 rs172962 0 21 20649018 NT_011512.12 7683210
ss1848949 OVLP-000925-30157 C/T 4 rs172961 0 21 20744833 NT_011512.12 7779025
ss1848927 OVLP-000925-10660 A/G 4 rs861098 0 3 195537016 NT_005612.17 101831442
ss1848939 OVLP-000925-20095 C/T 4 rs381641 0 5 65499586 NT_034772.7 15389779
ss1848945 OVLP-000925-26032 A/G 4 rs171734 0 5 111671116 NT_034772.7 61561309
ss1848946 OVLP-000925-26049 C/T 4 rs554514 0 5 111794577 NT_034772.7 61684770
ss1848929 OVLP-000925-12172 A/C 4 rs171520 0 5 129897735 NT_034772.7 79787928
ss1848923 OVLP-000925-7121 A/G 4 rs1234908 0 6 165108026 NT_025741.16 104878092
ss1848928 OVLP-000925-11461 A/G 4 rs1234909 0 9 122423732 NT_008470.20 54203180
ss1848934 OVLP-000925-17165 C/T 4 rs1234913 0 9 122539608 NT_008470.20 54319056
ss1848921 OVLP-000925-5163 A/G 4 rs1234906 0 X 28389970 NT_167197.2 26256976
30 of 936 subsnp's starting at ss1848944. ss# starting at ss

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