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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-4-6
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:629
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1855372 OVLP-000925-21013 C/T 4 rs151268 0 1 58610132 NT_032977.10 58024144
ss1855364 OVLP-000925-9333 G/T 4 rs1236914 0 1 164752284 NT_004487.20 21567697
ss1855369 OVLP-000925-16975 A/C 4 rs698735 0 11 7804798 NT_009237.19 7744798
ss1855362 OVLP-000925-8371 A/C 4 rs183137 0 16 9431557 NT_010393.17 9421557
ss1855366 OVLP-000925-13590 A/G 4 rs183406 0 16 9636257 NT_010393.17 9626257
ss1855367 OVLP-000925-13612 C/G 4 rs189778 0 16 9650957 NT_010393.17 9640957
ss1855375 OVLP-000925-28510 A/G 4 rs168866 1 16 10159999 NT_010393.17 10149999
ss1855382 OVLP-000925-33568 C/T 4 rs168866 0 16 10159999 NT_010393.17 10149999
ss1855383 OVLP-000925-33576 C/T 4 rs1071502 0 16 10167955 NT_010393.17 10157955
ss1855365 OVLP-000925-10669 A/G 4 rs863727 0 3 195540829 NT_005612.17 101835255
ss1855360 OVLP-000925-4060 C/G 4 rs1312287 0 5 65045816 NT_034772.7 14936009
ss1855359 OVLP-000925-4059 G/T 4 rs1312286 0 5 65045826 NT_034772.7 14936019
ss1855373 OVLP-000925-25121 G/T 4 rs183044 0 5 65565976 NT_034772.7 15456169
ss1855384 OVLP-000925-37140 G/T 4 rs183044 0 5 65565976 NT_034772.7 15456169
ss1855376 OVLP-000925-28597 A/G 4 rs28126 0 5 65629243 NT_034772.7 15519436
ss1855387 OVLP-000925-39319 A/G 4 rs28126 0 5 65629243 NT_034772.7 15519436
ss1855377 OVLP-000925-28599 C/T 4 rs43207 0 5 65629429 NT_034772.7 15519622
ss1855388 OVLP-000925-39321 C/T 4 rs43207 0 5 65629429 NT_034772.7 15519622
ss1855378 OVLP-000925-28624 A/T 4 rs154864 0 5 65638407 NT_034772.7 15528600
ss1855380 OVLP-000925-30825 A/T 4 rs154864 0 5 65638407 NT_034772.7 15528600
ss1855386 OVLP-000925-39306 G/T 4 rs154956 0 5 65646857 NT_034772.7 15537050
ss1855379 OVLP-000925-28710 C/G 4 rs796784 0 5 65668423 NT_034772.7 15558616
ss1855381 OVLP-000925-30857 A/G 4 rs27394 1 5 65669930 NT_034772.7 15560123
ss1855385 OVLP-000925-38357 A/G 4 rs1154307 0 5 111685815 NT_034772.7 61576008
ss1855374 OVLP-000925-26018 G/T 4 rs43180 0 5 111756460 NT_034772.7 61646653
ss1855371 OVLP-000925-19946 C/G 4 rs30660 0 5 129673794 NT_034772.7 79563987
ss1855368 OVLP-000925-14136 A/C 4 rs863792 0 6 165606169 NT_025741.16 105376235
ss1855363 OVLP-000925-9251 C/T 4 rs1236913 0 9 122371200 NT_008470.20 54150648
ss1855370 OVLP-000925-17156 A/G 4 rs1236916 0 9 122539891 NT_008470.20 54319339
ss1855361 OVLP-000925-5159 C/G 4 rs1236911 0 X 28457702 NT_167197.2 26324708
30 of 629 subsnp's starting at ss1855372. ss# starting at ss

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